Dros019415.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000484.1:6474418-6489024[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.08 23 7.5 0.3 1 23 56 79 56 79 0.89 2 35 6.3e-05 0.018 17.3 5.0 1 23 85 107 85 108 0.95 3 35 0.0005 0.14 14.4 0.2 2 23 114 136 113 136 0.95 4 35 0.032 9.1 8.8 0.3 1 23 141 164 141 164 0.96 5 35 1.2e-05 0.0035 19.5 0.4 2 23 171 193 170 193 0.91 6 35 3.8e-06 0.0011 21.1 0.9 1 23 199 221 199 221 0.97 7 35 6.6e-05 0.019 17.2 0.2 1 23 227 249 227 249 0.97 8 35 0.87 2.5e+02 4.2 0.3 1 23 385 408 385 408 0.82 9 35 5e-06 0.0014 20.7 1.6 1 23 414 436 414 436 0.97 10 35 0.00063 0.18 14.1 0.4 3 23 443 464 442 464 0.95 11 35 0.0037 1.1 11.7 1.5 1 23 469 492 469 492 0.96 12 35 1.3e-06 0.00038 22.5 0.2 3 23 500 521 498 521 0.94 13 35 6.4e-07 0.00018 23.5 1.0 1 23 527 549 527 549 0.97 14 35 6e-05 0.017 17.3 0.3 1 23 555 577 555 577 0.98 15 35 0.00075 0.22 13.9 1.1 4 23 695 715 695 715 0.94 16 35 7.5e-05 0.022 17.0 0.5 3 23 791 812 790 812 0.96 17 35 9e-05 0.026 16.8 0.6 1 23 818 840 818 840 0.97 18 35 1.5e-05 0.0044 19.2 0.8 1 23 846 868 846 868 0.98 19 35 0.067 19 7.7 0.4 1 23 1014 1037 1014 1037 0.92 20 35 0.0058 1.7 11.1 2.5 1 23 1043 1066 1043 1066 0.88 21 35 0.22 64 6.1 0.6 1 23 1258 1281 1258 1281 0.92 22 35 2.4e-05 0.0069 18.6 2.3 1 23 1287 1309 1287 1310 0.95 23 35 0.0061 1.7 11.0 3.0 3 23 1317 1338 1315 1338 0.95 24 35 4.1e-05 0.012 17.8 1.0 1 23 1343 1366 1343 1366 0.98 25 35 1e-05 0.0029 19.8 1.7 2 23 1373 1394 1372 1394 0.97 26 35 1.9e-05 0.0053 18.9 0.9 1 23 1400 1422 1400 1422 0.97 27 35 0.00073 0.21 13.9 1.3 1 21 1428 1448 1428 1449 0.90 28 35 0.086 25 7.4 0.3 2 20 1659 1677 1658 1678 0.94 29 35 0.17 49 6.5 4.2 1 23 1729 1752 1729 1752 0.93 30 35 0.0029 0.83 12.0 6.6 1 23 1758 1780 1758 1781 0.95 31 35 0.0099 2.8 10.4 0.3 2 23 1787 1809 1786 1809 0.95 32 35 0.011 3 10.3 3.2 1 23 1814 1837 1814 1837 0.96 33 35 9.1e-07 0.00026 23.1 0.4 2 23 1844 1865 1843 1865 0.96 34 35 8.9e-06 0.0025 19.9 1.4 1 23 1871 1893 1871 1893 0.97 35 35 0.0007 0.2 14.0 0.6 1 23 1899 1921 1899 1921 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCGTTATCAACGAAAGATTCATCCAGGGAAACTGAAATTGTTAATCGTGGTAAACAAGTTGCAAAACGAAAACCAAGAAAAAGGAAAGAATCTGATCAACTTTCTGCGGAAAATAATGGCAAAAAATCAGAGAGTGGGAGCTCTAAAGTAAAAAATGAGTTCATTTGTTCAGTATGTAATACTGTATTTGCAAAAAAAGAAATACTCCAGGCTCATTTTGTACGCAAACACACTGaagaatacaatttttcttGTGAACATTGtggcaaaaaatttaaaattaaaggaGACCTAACAACCCACACAAGACTTCATCATCTAGAATCTCCTACTGTGTGTGATGTCTGCGGTAAACCGTACAAGAATAGTCTTTCTCTTTACGTTCACCAAAAATACGCTCATTATAAAGCGAGTTTTGAATGTCAGTTTTGTAAGCGGCGCATGGTTACTCAAGAGAACCTTGACCAACATATTGCCATAATGCATACACAACGTGAGAATCTGGTTTGCGAAGAGTgtggaaaaaattttactaaaaaagtcAATCTTCAACGACATTTTATAAATGTACACACAGATATAAAATCGTTCGTTTGCCCAGTATGTAATAGAGCATTTGCTCAAAGATATCATCTCAGACAGCATCTGCTTCTTCATACAGGCAAGCGTCTCTTTATATGTGATATATGTGGGAAGCAATTTGCACAAAAACCAGGGCTTCTAAGCCATAGAAAACTTCATCCTGGAGAACATCCACCACTACCTGTTATTCGATTACATCATGTTcttaatgaatttttgaaaaaGAAATCTCGTAAGGAAGAGCAACTGAATCATCGTAAGTCAAAATCTCGCCTCAAACTGAAGAAAATTATCTTTCAATCGATTGGAACTATCGATAAACAGTTCAGCATAATTAAAGAACTGAATTTCATTAAGGCTACAAGACAAAAGAAACAAGAGAATGAGACAGAACCAAGATTACCAACAGAAAATTTGAATGTGCTATCCCTTAATGATCCATCAGTTTCAGCCATTCCACTTTCTGTAACTGATATCATCACTGCATTAAAACAACCAGATGAGCACTCTATGCAAAATAATAATGAGTCTCTAGAGACTAAAAAACCTCCACCAAAAACAGAGTTTACCTGTTCAGTTTGTGGTGCTGTATTCCTCCGCAAAGTAATTCTACAGTCTCATTTTGCTAGAAAGCACTCCGAGCAGTACAATTTTTCTTGTAAAGAGTGCGGCAAACAGTTCAAAGTTAAAGGAGATCTTACAACTCATTTAAGGTTTCATCGAGAACCACCTGCAATTTGTGATGCCTGTGGAAAAACTTACAAGAACAGCCGCTACCTTTATTTACATCAGAGATATGCTCATTACAAAACTGCATTTCCATGTCATATCTGTAGACGATTTATGGCTACTCAAGAAAATCTCAATCAACATATACAACAGCAACATGGAAATAAAGAAAGAGTAATTTGCGATGAGTGTGGCAAAAGTTTTGCTTCTAATGACACTCTTAAGCGACATATTAAATTTGTACACTACAAGGTCAGGTCACACATGTGTGAGATCTGTGATAAATCGTTTGCTCGACGCTCTGAATTGAGACAGCATCTGCTTATTCACACTGGAAAGCGCCTTTTTATTTGTGACATATGTGGTCAACAGTTCACTCAAAAACCTGGACTAGTCAGTCATAGAAAGCGACATCCTGGTGAACATCCTCCATTGCCCATAGTTAGATTGGATCGTGCCCTTAGTGAATTTACTaagaaAAAATGGACCATATATCTAATAGAATTTGCGGATGTTGAAATTAAACGTAAATTAACAGAAACTAAAACTCCTTCATATTGGGCAGCTGAAAACACCACTCAGAATATAAAATCTCAACAAAGAAACGATATCGAATTAgataaaaagattattttactgCCATATTCTACACAAAATCGTTCTGAGCAGTACAATTTTCCTTGTAAAGAATATGGCAAAAAGTTTGGTATTAAAGAAAACCTCTCAACCCATTTAGGGATTCATAGAGAATCAGCTTCGGTCCGTAATGACTGTGGAAAAACATTCAAGAACGTTCGCTACCTTCAAATGCATATGAAACATGTTCACTACAAACCATCATTTCCATGTCAACTCTACAGACGATTTATGGCTACTCCAGAAAGTCTTGATGAAAACGTGAAACAACATCACCAGAAAAAAAGAATTACTTCTGTTAACGCTACACAAGATATTGAATCTGAACACACACAAAATATTGAATCTGATCCGCTCTCAATAGAAAATATCAATGAACAAATGCAACAGCGACTTGAGAAGAGGGAAAGGGTTTTCTGTGATGAGTGTGGCAACAGTTTTGCCAGTAAAGACACTCTTAAACGACATGTTAAATATGTACATTATAAAGTCAGATCACATGTATGTGAGATCTGTAATAAACCGTTTGCTCGACGATTTGAATGGAGGCAACATCTACTTATTCACACGGGAAAGCGTCTTTTTATTTGTGACATATGTAATCAAGAATTCACTCAGAAGTCTGGATTAGTTAATCACAGAAAGCGACATCCGGGCCAACTTCCTCCTTTGCCCATGGTTCAATTCGATCATGTCCTTCATAATCTAAAAGAAGTAGATTACAGCCCTAAATCCTCTTCTAATGTGGTTCAAAATTTAGTTCCAATAACAAATGCATTCCCCTCtcttgaaaatgaaaaagttgATGAAGACAAAGGATATAAAAAATTCCTGGTATTAAAAACCATTAAAGCAATTGAGGAATCGGATCCACTCTCACTTGAAGACTTAAAAAATCTTGACAATGAAATGGACTTTGAGGATATTAAAGTTGGACAGAAATTACTAGATACTGAAACTCTTTTATCTTCTGCAGTTAATAATGCCATTGAAAGTATTAAAGTTGGACAAGAAGAAAATGTCGAGTCTGATCCGCTATCGATAGAAAATGAAACAGAACTAACAAAGCCTACtgtatcagaaaattttatttgcaatgTTTGTGGTTTTACATTTCTACGTAAAGAAACACTTGGAGTTCATTTTATACGTATGCACACACGTTTATCTATATTTCCTTGTAATGAGTGCGACAAATCTTTCAAGCTCCAGAGTGATCTCGATTGTCATGTCAAGTATTCTCATCGAAGTGCCAGTTCAACAATTTATTTATCAAAGAAGAGGACGTTTTTCAACGGTGGACTAGTGAACTTTGGTATAATTAAGAAGCCAAAATTCGTGATACTCAAGTTTCCCAACAAACTGATGCCAATAAAGGAAGCGGAAGATCGCCTgagagtgaaaaaaaaaaattcgtcactgAATCATCTTCAGGAGGAGAAAATAATTGCCATCCATGACCAGACGTCTGATTTCGATCACAACTATACTAGCGTACCTCTTTGGTTAAAAGAAATAGAATCTGACTCCAACTGGTCAACTGCTGAAGCCAGTATCATGTCACTTTCTAGTGAACCTTTTGGCATAGAAGAGCGCATTGAAAATGAAGATATGAAAGAAGATATGACAGAAAATAACATAGATGTTAAAAAACAAGatgctaaaaataataaaaaagatatgaaaaaaagtataaaactgTACAATAAGCAAGATACCAAACAATATATAAACCAGAAACCTGCGACTGAAGAAgataaatctgaaaaaaaaaagttaatccGAGAGTTGAAAGCAGCTGCCTTAAAAACAGGAGATTTTTCTTGCATTCTTTGTGGAGTAAAATGTACTCGATTAGAAGCATTGAGTGCTCATCTTATTCGAAAGCATACTTTTCAATGTGAGTTCCCTTGCAAAGAATGCGGTAAACAATTTAAACTCCGTGGTGATCTCACAACCCACACAAGACTGCATCATCGAGAAAGACCTGTAAATTGTGATATTTGCGGTAAAGAGTTGAGGAACAGTCATTCGTTATATATGCACCAGAAGCACAATCATTATAAACCGAGGTTCAAATGTTCTCAGTGTAATAAACGTCTAGCAACTCAAGAAAATCTTGATCAACATATGCTGACGCAGCATATAAAGAAGGAAAAATGTGTTTGCGAAGAATGTGGAAAAACCTTCGGTGAAACATTTGACCTTCGGAATCATATGAGAACACATACGGGTGACAAGCCTTATTCTTGTTCAGTTTGCCAAAGATCTTTCGCACGTACAAGTAGCCTTACTCAGCATCTTCTACTTCACACTGGGGCAAGACTCTACGAATGTGACATTTGTAAGAAGAGTTTTACTCAGAGATCCGGACTCATTTGTCACAGAAAGATACTCAAAACCTTGGATGGCAATCGAGGGATTTTCTTATGTGAAAACAAATCAATAGTATTGCGAAAGTGGCAAATTTTGGAGTTTGATGATAAGCCATATTATGCCTACGTACCggaaagtgaattttatttagCAGAAAATACATTACCTGAGTATCatgaaatccaagaaaataACAACTATGCCAAAAAGTCAATTAAAATCGAATTCAATACTAACGATGAATTATCTGATAATTGCTCAATCGACAATCAAGAACTGGCTTATAACAAACAAGAAGAAATAGAAGAAGAATTCGCAGAGCAAGAAGAGTATACCGCAATGCTGGACAAAGGATTGATAAATGCAAATGGCTCCAACAAAGAAAATGAAGGTGACTCATTTGAGAATCTCTATCAATTAAAAGTAGATGGTAGCATGGTCACTATTGAGAAACTCGATTCAAATAACCCGGACTCAAATACATTTTCGGAAGCAGATGAAAACGAAATAGAGAAAAATGGAGAAAATGTTGAAAGTGAAGAGGAACTTTTTGATTCATTTATTGAAGATGACGAATCTtcagattcaaaaattaatcattCGCCTAATCCTTTCCAGGAATCTGAAAATACTTCAATAATCTTAAAATGTAAGGCTTGTTCTGAAACTTTTAGTTCGAATCTAGCTTTTAAGAAACACGTGGCCTGCACTCACAAGAAAAAAGTCTGTATTCATGAAAACGGAGCTTACATTTGTTCAGTCTGCGATTACTGGACACTTAAAAAAAGCTTATTCGCAGCTCATTTGGAAAGGAAGCACGGGACTTGGACAGACAAACAACCTAACAATCTCATTTATCCTTGCGCTGCTTGTGGTTTTGTTTGTAGGTCAAAACACTCATTGCAGTCCCATTTTACTCGAAAACACACTGACAAGTATGAGCATCAGTGCAAATTTTGTACGAAACAATTCAAAGTCAAAGGTGACCTCACTAATCACGTAAGATTTCATCACAAAGAAAAACCAATAAGTTGTGACGTCTGTGGAAAGATATGCCAGAATACTGGATCCCTCTACGTACACCAGAAATGGGCTCACTACAAACCAAAGTATGAGTGCCATATATGCCACAGGCGAATGGTCACTCAAAAGAACCTGGATCAACATTTGATCAGCCAGCATGAGAAGAGAGAAAAGATAGTTTGTGCTGAGTGTGGAAAGACTTTTACAAAAAAGGATTCCTTCAAAAGACACATGGCTGTGCATACAGGAAGCAAACCACACTCTTGTATGATCTGTAATAAGCCCTTCGCTCGCAGGTCTCAACTCAGGCAACATTTGCTCATACACACAGGAAAGAAACCTTTCATTTGTGAAATTTGTGGAAAGGGTTTTACACAAAAACCAGGACTTATCTGTCACAGGAAAATACACCCCGGAATTCATCCACGTTTACCTGTTATGCCGATTGCAGATTTGGTTAAAGATCTGACAAAAGAGTTCAATTTTGAACAGGAGAACGAGGATATTCAAGATACGCCAGATGATCCAGAATTTCTAGATGGGGAAGAGATTCTTGCCGGTCCAGAGATTCTGGAAAGTGATGAAATTCTTGAAAGTCAGGAAGTCTTTtatgaacaagaaatgcaaGACGATCAGGACTTACAAGACCATCAAGGATATCATGTTGATCAACAATTTCTAAATGATCAACAATTTCATGCTACTCTAGAAATTGAACAAAATCATGAAATTGTTGAGAGTCAAGTCATTGAAATTGGGCCTTGA
- Protein Sequence
- MSSLSTKDSSRETEIVNRGKQVAKRKPRKRKESDQLSAENNGKKSESGSSKVKNEFICSVCNTVFAKKEILQAHFVRKHTEEYNFSCEHCGKKFKIKGDLTTHTRLHHLESPTVCDVCGKPYKNSLSLYVHQKYAHYKASFECQFCKRRMVTQENLDQHIAIMHTQRENLVCEECGKNFTKKVNLQRHFINVHTDIKSFVCPVCNRAFAQRYHLRQHLLLHTGKRLFICDICGKQFAQKPGLLSHRKLHPGEHPPLPVIRLHHVLNEFLKKKSRKEEQLNHRKSKSRLKLKKIIFQSIGTIDKQFSIIKELNFIKATRQKKQENETEPRLPTENLNVLSLNDPSVSAIPLSVTDIITALKQPDEHSMQNNNESLETKKPPPKTEFTCSVCGAVFLRKVILQSHFARKHSEQYNFSCKECGKQFKVKGDLTTHLRFHREPPAICDACGKTYKNSRYLYLHQRYAHYKTAFPCHICRRFMATQENLNQHIQQQHGNKERVICDECGKSFASNDTLKRHIKFVHYKVRSHMCEICDKSFARRSELRQHLLIHTGKRLFICDICGQQFTQKPGLVSHRKRHPGEHPPLPIVRLDRALSEFTKKKWTIYLIEFADVEIKRKLTETKTPSYWAAENTTQNIKSQQRNDIELDKKIILLPYSTQNRSEQYNFPCKEYGKKFGIKENLSTHLGIHRESASVRNDCGKTFKNVRYLQMHMKHVHYKPSFPCQLYRRFMATPESLDENVKQHHQKKRITSVNATQDIESEHTQNIESDPLSIENINEQMQQRLEKRERVFCDECGNSFASKDTLKRHVKYVHYKVRSHVCEICNKPFARRFEWRQHLLIHTGKRLFICDICNQEFTQKSGLVNHRKRHPGQLPPLPMVQFDHVLHNLKEVDYSPKSSSNVVQNLVPITNAFPSLENEKVDEDKGYKKFLVLKTIKAIEESDPLSLEDLKNLDNEMDFEDIKVGQKLLDTETLLSSAVNNAIESIKVGQEENVESDPLSIENETELTKPTVSENFICNVCGFTFLRKETLGVHFIRMHTRLSIFPCNECDKSFKLQSDLDCHVKYSHRSASSTIYLSKKRTFFNGGLVNFGIIKKPKFVILKFPNKLMPIKEAEDRLRVKKKNSSLNHLQEEKIIAIHDQTSDFDHNYTSVPLWLKEIESDSNWSTAEASIMSLSSEPFGIEERIENEDMKEDMTENNIDVKKQDAKNNKKDMKKSIKLYNKQDTKQYINQKPATEEDKSEKKKLIRELKAAALKTGDFSCILCGVKCTRLEALSAHLIRKHTFQCEFPCKECGKQFKLRGDLTTHTRLHHRERPVNCDICGKELRNSHSLYMHQKHNHYKPRFKCSQCNKRLATQENLDQHMLTQHIKKEKCVCEECGKTFGETFDLRNHMRTHTGDKPYSCSVCQRSFARTSSLTQHLLLHTGARLYECDICKKSFTQRSGLICHRKILKTLDGNRGIFLCENKSIVLRKWQILEFDDKPYYAYVPESEFYLAENTLPEYHEIQENNNYAKKSIKIEFNTNDELSDNCSIDNQELAYNKQEEIEEEFAEQEEYTAMLDKGLINANGSNKENEGDSFENLYQLKVDGSMVTIEKLDSNNPDSNTFSEADENEIEKNGENVESEEELFDSFIEDDESSDSKINHSPNPFQESENTSIILKCKACSETFSSNLAFKKHVACTHKKKVCIHENGAYICSVCDYWTLKKSLFAAHLERKHGTWTDKQPNNLIYPCAACGFVCRSKHSLQSHFTRKHTDKYEHQCKFCTKQFKVKGDLTNHVRFHHKEKPISCDVCGKICQNTGSLYVHQKWAHYKPKYECHICHRRMVTQKNLDQHLISQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGSKPHSCMICNKPFARRSQLRQHLLIHTGKKPFICEICGKGFTQKPGLICHRKIHPGIHPRLPVMPIADLVKDLTKEFNFEQENEDIQDTPDDPEFLDGEEILAGPEILESDEILESQEVFYEQEMQDDQDLQDHQGYHVDQQFLNDQQFHATLEIEQNHEIVESQVIEIGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -