Dros029666.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diplolepis rosae
Gene Symbol
pol
Assembly
GCA_030998225.1
Location
JAPYXD010000657.1:755838-783397[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.1e-08 5e-05 24.8 0.0 9 37 331 359 324 368 0.80

Sequence Information

Coding Sequence
ATGGGCAAACCTGTTTCACATGTTGCCAAGAAGACGACAAATGAATGGCGACCATGTGGATCTTACGAGAAGCTGAACTCCAGGACCATCCCGGATAAATACCCGATTCCGTATATTGAGGACTTTGCGCAACATTTGCACGGCAAGACCATCTTCTCAACCGTCGACCTCGTCCGTGCGTACAAACAGATCCCGGTGGCGGAAGAAGACATTCCAAAGACGGCTATCACCACGCCGTTTGGACTCTTCGATTTCCCGTTCATGAACTTCGGTCTACGTAACGCAGCGCAAACTTTTCAACGGTTCATCAACGAGGTTTTCCTTGGATTGGATTTCCTATATGTATACATCGACGACTTCCTCGTCACATCTTCTTCAACCGCAGAACATAAGATAcaagggTCTTCGAAGTGCGTGTGGGGACAAAGTTCGGTCAAATGCAAGAAGAGCTTAGCTGAAACAACTCTACTGGTTTTCCCAGCACCAAATGCACCGCTCGCGATTTTCACAGATGCATCGGACGTCGCTATAGGAACAGTCCTACAGCAGAAGTTTCAAGATGCTTCAACTGACGAAGCATCTCTTCATGCAATAGAACTTACAGCAGAAAAAGTCCTCGAGTTGATAGAATCTGCTTATCCAAATCCAGTGACAGTGATAGATTTAGCCAaAGAGTATGGCTGGGAACCATTAGCCGTTGAGGCGAAATTGAACGAATTGCAAGAAAAGAAACTCGTAAAGGCAATGGAACACGGAGCTTTTACAAGAGTTGTGCATCAAGATACTCAAGTCAaggTTGTTAAACAAATGCCTACGATAGCAAGTTCGAAACAACCAACAATAGCAATCATCACAGCTCAATACTGTGAGAAATTAGCAGTTGATTCCATGATTGAGAATAAGGAAACGTTAACTATGATAAAAGCACAACCAAAAACGAAAAAGCCGTATGCAAGATTTCAGTATTCTATAGAAAACATTCAAGATGTTGtggaaaaagttaaaaataaagaaatgtcTCTTAGTCATGCTTCTTCAGTGTACAAGATTCCTAAAACTACTCTATTTAGATATGTGCATCAGGTAAATGTAAGTATTGAAAGAAAGATGGGTCCTACTCCGGTACTTAGTGCTTCGGAAGAggtacgtataaaaaattggatTATTGCTAAAGCAAAAGTAGGATTTCCCATGCATAAAGAAGCTGTGAAAGATGctgttcagaaaattttaaaagaaactgGTCGACCAAACCCATTTGCAGATGATAGACCAGGCAAAAGCTGgatgaatttgtttttaaagaGACATCCTGAAATAACAAACACAAACACAGAACTTTTATCTAAGGCAAGAGCTTGTGTTACAGAAGAAAGCATTAGACAGTGGTTTAATGAAACAATTTTATACTTTAAACAAGAAGGAGCTTTAGATGTTTTGAGTGATTCGGATAGAGTGTATAATTTAGATGAAATTGGGATAGAGATATGTCCCAAAAGTGGTAAACTTTTAGGAGCAAGAAAGGAGCGTGATCACTACAGGATTGCAAACGGACAAGAAAAACAATCAATAACTGTTTTATGCTGTTATTCTGCTAGTGGCATAGTTATAGATCCTATGATTATTTATCCTTATCAAAGAATTCCAGGAGAAATAATGAAGCATGTTCCTGACAACATTGCTGTGGGGCGAATCCCAACTGGTTGGATCATCACACCTACGTTCTTCGAGTACTCAGCTAATATCCTTTACAAGAAATTAGTACAAAAAGGCATAAAGTTTCCGATAGTTTTATTCCTCGATGGCCACAAGTCTCATGTATCAATGGAGATGCATGATTTctgtgttgaaaaaaaaatattagttgTTCGCTTTATAGCTCGTGCATCTCATATTCAACAAGCATGTGATGTgggaatttacaaatgtgtgaAAACAGAATGGAGAAAAGTAGTGCTACAGCATCAACAATCATCAACAGAACCAATAACAAGAATCAACTTCGCTCCTCTTTTTGCTGCTGCTCATGCCAATGCTGCAAAGCCTACAACTATACAAAATGCTTTCAGACGCTCTGGCCTTTTCCCTTTTAACCCTGAAAATGTTGACTATTCTAAGTGTATGTCGACTAGACATAAAGAAATTCGCCTCTTAGAAGCACCTGAAAAAAtactttcagaaaataaaaGTGTGAGACAAGAAGTTGTTTTGGCAGATTCATTGTTGTGTGACATAGAAAGTAAACTACCGCCAGAAGTTAAGTCACTGTTTTTGAGTGCATATGAATCACAAGAGGAGCCAAGAATAGAAAAAGTGCTGTTCTCAATATGGAAAAAAGCTAAAATTAATTCATTGACCTGTAAGGAAACAGTACAAAGTACGAGTaacagtattattattgaaccattgacaaattatttaaaaactagtGCTAATGTCCAAGATGGTGTAAATATTGACACGCTTGTCTCTCAAGAAGTTACTTTTGAAAACAATTCAGatgAACTGGAGCAATTTTCTTTATCTGATATACCTATTCATTTTGTAAATGAAAGTTATTGTGATATGAGTGCAATTTTCGAAAGCGAACACTTTCTTCAAGAAGAAGATCCAGTTATAGATTTAACTTCAACAGAAAATGTAGCTAATAATATTTATGTAGTGTCAAAAGATGATCAAAGTGATGAAACATCAACGCTTGGTGCAGATATTATTCGTAACAATAACGTTAAATCAGTAGCAAGTAATGCAAGTCATacagtatttgaagataaatgTGATAATATAGTTAAAACTGATAGAAATATAAATCTACAAAGTGATGTACCTTTAGATCTCTCTAATAAACGTAAGCCGATAGATAATTCAGTGAAGCACGAATGGAGCTGTGATATTACTAGTAAAAAGAAGACACCTCTTACAACGCTTTCAGAAAATAATCTTAATATTGACAAAGGAGAATCAAACGTATACACTTTGGGTAACATTGGCGCACACAGAATAGTGTGCACGAAATTGCCTACTGTTGGACACACTAGAGAAGCAATGACTGCTGCTGGAAACACGACGACTCGATTATTAgGTACTTTTCAGAAAGTTGACTTTGTTTTTCTCGTCGGTGTCGGTGGTGGTGTTCCACATTATACAGATTATGTCAAGCACGTAAGATTAGGTGACGTCGTAATTTCTCATCCAACTGCACTCAATAAGCCATATGTTTACGTCTActgtgaaaatgcaaaaattaacGGAAATGGAAACTACCACTTCGAAACCAAAGAATACTGCCCTTCAAATTTATGTCTTCAAGAAATTGCTGCTAATTTAACAAGTCAGgcAGAGAATAATTCAAATCCTCCCTGGCAAACTTATATGAGTGAAGGCTTAAAAGCGTTGGGCAGCCAAACGGAACACGACTTCAAGGCTCCTTCACCGGAAACTGATAAGTTATATATGGCGATCGGTGACAAGGACGTGATTGAAGTAGCTCATCCTAGTGCTCCTCAAGATTCTACAAATATAAgAACGGATGGCTGTGCTCGCATTCACTTAGCTCCCGTCGCCTCTGGTCGTCAAATCGCCCGGGACGATCAGCTCCGGCAAAAATTCGCCTCTCATTTTGGAGCACTTGCATTTGACGCCGAAATGGACGCCGTAGTAGAAAGTATTTTGGGCAACTGTCGCGACAGTTTTGCTGTTGTTAGAGGGATTTCTGATTACAAAGACGGATCCCGCGTTAAGGAATGGCAACCTTATGCTTCACTTGCTGCAGCCAGCGTTGTAAAAGCGATTATCTGCGCCATGGATCCTCCTGTAAACGCTTAA
Protein Sequence
MGKPVSHVAKKTTNEWRPCGSYEKLNSRTIPDKYPIPYIEDFAQHLHGKTIFSTVDLVRAYKQIPVAEEDIPKTAITTPFGLFDFPFMNFGLRNAAQTFQRFINEVFLGLDFLYVYIDDFLVTSSSTAEHKIQGSSKCVWGQSSVKCKKSLAETTLLVFPAPNAPLAIFTDASDVAIGTVLQQKFQDASTDEASLHAIELTAEKVLELIESAYPNPVTVIDLAKEYGWEPLAVEAKLNELQEKKLVKAMEHGAFTRVVHQDTQVKVVKQMPTIASSKQPTIAIITAQYCEKLAVDSMIENKETLTMIKAQPKTKKPYARFQYSIENIQDVVEKVKNKEMSLSHASSVYKIPKTTLFRYVHQVNVSIERKMGPTPVLSASEEVRIKNWIIAKAKVGFPMHKEAVKDAVQKILKETGRPNPFADDRPGKSWMNLFLKRHPEITNTNTELLSKARACVTEESIRQWFNETILYFKQEGALDVLSDSDRVYNLDEIGIEICPKSGKLLGARKERDHYRIANGQEKQSITVLCCYSASGIVIDPMIIYPYQRIPGEIMKHVPDNIAVGRIPTGWIITPTFFEYSANILYKKLVQKGIKFPIVLFLDGHKSHVSMEMHDFCVEKKILVVRFIARASHIQQACDVGIYKCVKTEWRKVVLQHQQSSTEPITRINFAPLFAAAHANAAKPTTIQNAFRRSGLFPFNPENVDYSKCMSTRHKEIRLLEAPEKILSENKSVRQEVVLADSLLCDIESKLPPEVKSLFLSAYESQEEPRIEKVLFSIWKKAKINSLTCKETVQSTSNSIIIEPLTNYLKTSANVQDGVNIDTLVSQEVTFENNSDELEQFSLSDIPIHFVNESYCDMSAIFESEHFLQEEDPVIDLTSTENVANNIYVVSKDDQSDETSTLGADIIRNNNVKSVASNASHTVFEDKCDNIVKTDRNINLQSDVPLDLSNKRKPIDNSVKHEWSCDITSKKKTPLTTLSENNLNIDKGESNVYTLGNIGAHRIVCTKLPTVGHTREAMTAAGNTTTRLLGTFQKVDFVFLVGVGGGVPHYTDYVKHVRLGDVVISHPTALNKPYVYVYCENAKINGNGNYHFETKEYCPSNLCLQEIAANLTSQAENNSNPPWQTYMSEGLKALGSQTEHDFKAPSPETDKLYMAIGDKDVIEVAHPSAPQDSTNIRTDGCARIHLAPVASGRQIARDDQLRQKFASHFGALAFDAEMDAVVESILGNCRDSFAVVRGISDYKDGSRVKEWQPYASLAAASVVKAIICAMDPPVNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-