Dros017804.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000466.1:6749809-6751249[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-10 6e-07 30.9 0.0 2 42 16 55 15 58 0.89 2 2 1.2e-09 1.5e-06 29.6 0.1 2 44 300 341 299 342 0.94
Sequence Information
- Coding Sequence
- ATGACGCGTATAAGAAAACGCAGCTCAAAGATGGCAAAATGGACCGCAGAAGATTTGCAAGCAGCTTTAGGGGCCGTAAAAGAAGGAAAACCAATGACCAAAGCATCTGCTCTGTATGGCATTCCTCGCACTACAATATACAGGAGATtaaggaataaaaaattttcttcaccGAAACTGGGTCGAAGTTCTGTCTTCACTGCAGAGCAAGAAGAAATTTTAACTGACCACATTATCAAGTTACAACGCGCCTGttctttaaattcaaaaaaagttcgaagactagCTTTCGATCTTGCTGAAGAATTAAATCTTGATCATAATTTCAACAGAGAGAAAAAAGAAGCTGGTCAAGACTGGCTATCAGCTTTCCTTAAGCGAAACCCTGAAGCTCAAGTAATACGTAACCAGAAAACAGAAGAACTTCATGATACTAATAGTTTGAATTCTTTAAGCAATATCGATGAAGATCCATCCACGAGTAGAATCGATAATAGATATAAGATCGAGTTTTTTAAGATGGAAGTTAAGTTTTTGGATAGATCGGAAAATCGCAATTTTCAATCAGATCCCTCTGCAAATAGTTCTGATGAtatgaaaattggaataaatgaACACTTGAGTGACTCAACAAAGCTTGAAGAGACTGAAAAAGTGGTTGCAAATTCAGGAATGAAATTAAGAGTTAGAAATAAGAATCTTCCCGagaaagattttaataaaattcggACTGTTGTAAAAAAGAAAACATTAAACTTTgtagataaaaataaatttcttgatcAATTAGGAAAATCTAGTCAGAATGTGATTGAAGGCAAAGACAAAGATATTGTAAAGAAAATACCTACGGTTCagAAACGAGGGAAACGAACAAACAAAACTGCTTGCTGGACAGCAGAGGATTTAAATGCTGCTCTACGAGATGTAGCTAAAGGAATAACTTTGAGAGCAGCTTCAGCTTCACACGGAGTTCCTCGAACTTCAATTTACAGAAGACTAAagcaaaataattttgcttcgCCGAAACTTGGTCGAAATTCGGTATTCTCTCCAAAGCAAGAAAAGTTTCTGACTGACTACATATTAAATGCGTCTAAAACTTTCCCTATGAATTCCACTCTGTTTCGGAGATTAGCTTTCGAACTTGCAGAAAAGCTGAATCTTGACCATAATTTTAACAGGGAGATAAGGCTTGCAGGTAAGGATTGGTTAACGGCTTTCGTGAAACGAAATCCTAGGGTTGATTTCAAAGGAAAAAGAAcagtgttaaaaaaaaataattgccaAAGCGAAAACAACGTTTGCTTTTACGATTTTGAtgatttggttaaaaaatttccgAGTTTCGATTAA
- Protein Sequence
- MTRIRKRSSKMAKWTAEDLQAALGAVKEGKPMTKASALYGIPRTTIYRRLRNKKFSSPKLGRSSVFTAEQEEILTDHIIKLQRACSLNSKKVRRLAFDLAEELNLDHNFNREKKEAGQDWLSAFLKRNPEAQVIRNQKTEELHDTNSLNSLSNIDEDPSTSRIDNRYKIEFFKMEVKFLDRSENRNFQSDPSANSSDDMKIGINEHLSDSTKLEETEKVVANSGMKLRVRNKNLPEKDFNKIRTVVKKKTLNFVDKNKFLDQLGKSSQNVIEGKDKDIVKKIPTVQKRGKRTNKTACWTAEDLNAALRDVAKGITLRAASASHGVPRTSIYRRLKQNNFASPKLGRNSVFSPKQEKFLTDYILNASKTFPMNSTLFRRLAFELAEKLNLDHNFNREIRLAGKDWLTAFVKRNPRVDFKGKRTVLKKNNCQSENNVCFYDFDDLVKKFPSFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -