Dros054856.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- br
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000740.1:4064296-4066565[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-05 0.085 14.4 0.0 2 39 195 232 194 237 0.85 2 4 2.7e-11 3.3e-08 34.9 0.0 5 39 248 281 245 285 0.91 3 4 0.019 23 6.6 0.0 19 34 313 328 300 334 0.77 4 4 7.6e-13 9.2e-10 39.9 0.1 5 42 360 397 359 400 0.91
Sequence Information
- Coding Sequence
- ATGTctgaagacaataatcaaaatcaaataaatgaaaGTTTTTGCTTTAAATGGTGCGATTATCAAAATCATTTATCAGGGGTCGTTCGTCAGCTTCTTGACGAAAATTGTATGGTGGATGTTACTATATCTGCAGAAGGAGAACACATTCATGCTCATCGAATTGTTCTCAGCGCTTGCAGTACTTTATTCAAAGAACTACTCAGTCAGGTAACTGATGATCATCCAACAATAATATTAAGTGGCATACCTCTCGATGATGTTAGAGCAATTGTCGAATTCACATATCAGGGTGAAGTTCATATTCCCGAAGAAAATATTGCCAATCTCTTAGAGGCTGCAcgttttttacaaataaatggTCTGATGGAGTATGACGCAAACGATTCGGACATGAGATCAAAGCATTTTAACGACAATGATGATGTCTTTCAAGAATTGAATGATATGGAAAATAAAGTATTTGAAGTTATAGAAAAAAGTTACGAAGAATCATATGAACAATCGGGACAAAGTGCAGCAGAGGAGAATTCTGTGGTAAAGAAAAGAAAGCGGCGTTTTGCTGTGAAAAGGGAATACAGCGATGAAATGCTAGCTACTGCAATTAATAATTTACGTGATGGTCAGACTTTAATTGAGGCTTCTACCAAAAATAATATTCCTCGATCCACTTTATACATGCGAGCTAAATCATTAGGAATTAATTTAAATGCATCAAGAAGCGAATACCCCGCGGAGTGCATGGGTGCGGCGATAAAGTCTGTCATTGgaGGATCGAGTTTGCAACAAGCAGCAGAAATGTACGGTattccaaaaactgttctttGGCGGCGAATACAAAAACAAGGCTATCAGATTTTCCGTTCGGATATGAAAAGAAGTTATGGGTCTGATAAAAGAGAAGCTGCCGTAAAAGCTTTGGAACGAGGGGAGAATCTTTCGAAAGTTGCTAACGATTATCAGATACCAAAGACGACTTTATTCAGGGACAAGGCTCGATTAGTTAATCAGGGTAAATTGCCCATGTCTTgttggaaaaaaagaaaaactgagaatgaagaaataaaaaaacttcGATTAGAAGAGGCAGTAGCTGCttgtaaaaatggaaaaatgtcTCAAGCCGCGGCTTCTGTTTTGTATCATATTCCAAAGACTACTATATGGAGACGTTTAcagcaagaaaataaaaaactaagAAGTAAAAGAGCGTCTTCTAATACGCTTCATGCAAACGTAGATAAATTAGACAATGGTGATGAAAATACGTATTTCGAGGTCACATCTGGAATCCCGATAGCGTATATAGAAGGAAATGGAAGCATTGCTGaagaatctgttataattttGACAAACGAAGAAGTTGAAGAACTAAATTTGCAAGGCCGTACACAAATTATTGTCAAATCGAATACAGATGAAGAATTTATTACCGAAACTACGCCTACTGAAGATGATTCAAACTACAATACAACTAAGAGTTAG
- Protein Sequence
- MSEDNNQNQINESFCFKWCDYQNHLSGVVRQLLDENCMVDVTISAEGEHIHAHRIVLSACSTLFKELLSQVTDDHPTIILSGIPLDDVRAIVEFTYQGEVHIPEENIANLLEAARFLQINGLMEYDANDSDMRSKHFNDNDDVFQELNDMENKVFEVIEKSYEESYEQSGQSAAEENSVVKKRKRRFAVKREYSDEMLATAINNLRDGQTLIEASTKNNIPRSTLYMRAKSLGINLNASRSEYPAECMGAAIKSVIGGSSLQQAAEMYGIPKTVLWRRIQKQGYQIFRSDMKRSYGSDKREAAVKALERGENLSKVANDYQIPKTTLFRDKARLVNQGKLPMSCWKKRKTENEEIKKLRLEEAVAACKNGKMSQAAASVLYHIPKTTIWRRLQQENKKLRSKRASSNTLHANVDKLDNGDENTYFEVTSGIPIAYIEGNGSIAEESVIILTNEEVEELNLQGRTQIIVKSNTDEEFITETTPTEDDSNYNTTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00460936;
- 90% Identity
- iTF_00460936;
- 80% Identity
- iTF_00460936;