Basic Information

Gene Symbol
stc_1
Assembly
GCA_963662125.1
Location
OY759158.1:4693158-4699634[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 1.8e+04 -4.3 1.6 15 19 514 518 513 518 0.81
2 16 0.14 1.2e+03 -0.4 0.1 4 10 547 553 546 554 0.94
3 16 2.7e-06 0.024 14.7 11.3 4 18 564 578 562 579 0.94
4 16 0.002 17 5.5 12.5 1 18 615 632 615 633 0.94
5 16 0.56 5e+03 -2.4 0.6 1 5 642 646 642 651 0.83
6 16 0.79 7e+03 -2.8 1.0 6 10 661 665 660 665 0.90
7 16 1e-09 9e-06 25.6 14.4 1 19 671 689 671 689 0.98
8 16 0.85 7.6e+03 -2.9 0.9 5 10 718 723 718 723 0.94
9 16 0.00017 1.5 8.9 12.2 4 18 736 750 729 751 0.86
10 16 1.3 1.2e+04 -3.5 2.2 5 10 780 785 780 785 0.93
11 16 0.0031 27 4.9 11.1 1 11 791 801 791 813 0.90
12 16 3.7e-07 0.0033 17.4 20.1 1 19 818 836 818 836 0.98
13 16 0.55 4.9e+03 -2.3 1.5 5 10 864 869 864 877 0.82
14 16 1.3 1.2e+04 -3.5 5.9 10 19 883 893 880 893 0.73
15 16 4.2e-07 0.0037 17.2 14.2 1 16 929 944 929 954 0.87
16 16 7e-06 0.062 13.3 13.2 1 19 961 980 961 980 0.97

Sequence Information

Coding Sequence
ATGGCCACTTGGGATGGTTCGGATCAGGCGGGTCCTCCCGACGATCCCAATTTCTACCTCTACGGTCGACCGACCAACGCCGCCGCCGCGGCCAATCCTCGAACCTGGGACTACTACGCCAACGCTGGAAACGGAGGTTATTCCCACGGTTCTATGGGTCTCTACGCTCAAAACAATATTCCAATGTCCGCTCAGATATTTCAAGGCGCGCCTTATCAGGAACCTCGTTACGTCGCCTCGGTGAACGACACTCCGACGATAGCCGCCGATCAATCCTGTTACTTCGAAAACAACAGACAGATGCAAAAAAACTCTTGCAATTCGTCGCGTTATTCTaatcaacaattcaacaatacTCAGCACAAATATTCTAATTTACACGCCGGAGCGAGCGAATTCGTTCCTTCGtcgaaaataatgcaaaaaaattcgtcgccGACGTACTACAACAACGACGGCGACGTTCATCACAACGATTACGCTTTTGAAAATTCCCAAGGAAGTTCAAAcgtatttttcaacgacaataGAAATCGTACCAATGACAGACGTTACGACAATACGAAAAACAGCAATTCCTACAGAGGAGGCAATTATTACAAAGGACAGCGCAATCGTGGTTACGAAAATCAATACAACGCTCCTCGTGGAAACGACACGACGACCGCAGTTCCGGAATCCATCGCGTCGGTCAACGATCGAGTCGACGAAAGTGCCTATCGCGGTTCCAAACCTCAAAGAGCGAGAAGTCACGGTagatttcaaaacgatcgttaTTCCAATCAGACTCGTCAGCAGTACGAAAAATCTCGTCCCGACAGAAGAAAAATGATGACGGACACGTGGCCAAATTCGTCCGAagctacgaacgaaaatttcatcacCAAGGACGAAGATAACCTCAATCCGGGCGGTTATGGAAATCGTGGCAAATGGACGAGAAACGATCGAAGATTCACAACGGATAGACATCACGGAATAAACAAAACTCATCAATCGACCAACGGTTACGACGAATCTCAACCTTACGAAGCTCAAACGTCCGTGGgcgcatcgtcgtcgtcgtcgagaaaAGAACTTCCGCATCATCGTCAAACCGAACGAACGTCCAGAAACGATCGTGGACGTGGCAAGCAACGTGACGGTTCGGCCAATTACGAACGCACGGGATCACATTCACATCGCGATTACGATGGACAAAACGACGACAGAGATATCAAATTCGATAGAAACGACGGTGCGAAAAAATCTGTCGAAACGCGAGACGACGAATCGTTGAATTGGAGACAAAAGGACAAACTTCCGTCTAGAGAATTAATCATCAAGAGAAATAACAAGGAAATTGAATTTGATGACGATGCGAGTCAGAGAGAACGTTTGACCGAACAATTGAATCAGGGACGTTTGGAGTGTCTTATTTGTTGCGAGTACATCAGACAAAACGATCCGGTTTGGTCCTGCAACAATTGTTATCACGTGTTGCATTTGAAGTGCCTGAAGAAATGGGCCAATTCGTCGCAAGGCGaGAACGGTTGGCGATGTCCTGCCTGTCAGAACGTTAGTTTGACAGTTCCGGAAATTTATTACTGTTTCTGCGGCAAAGCCCGAATTCCGGAGTGGAATCGTCGCGACGTTGCTCATTCCTGCGGCGAAATTTGCGGACGTTTGAGATCGAAAAACAATTGCGTTCACAAATGCACGTTGCTGTGCCATCCGGGTTCTTGTCCGGAATGCATAGCCATGGTAACCCGAAATTGCGGTTGCGGTCGAACCTCCCAGAGTCTCAAATGCAGCACGACCACTCTCGTTGTTTGCGATGCCACGTGCGACAAGCCCCTCAATTGTAACATTcacaattgtgaaaaaaattgtcatcacGATGATTGCGGAGTTTGCGAAAAAACTTTGCATCAAGCATGTTACTGCGGAAAGCACGAACGCGATGTGACTTGTAACGCCGAAGTTCCGACGACTTACAGTTGCGAAGAAATTTGCGACAAATTGCTCGCTTGCGGAAATCATCGATGCAACGAATTGTGCCATCCGGGTGATTGCGGCGAGTGCAAATTGCAACCGGCtttggtgaaaaattgttgctgCGGTCAAACCCCGTTGGACGTTGTCAGAAATAATTGTCTCGATCCTGTTCCAAAATGCGACAAAGTGTGCTCCAAAAAATTGAAGTGCGGCCAGCCAAGCGATCCGCACACGTGCAAAATCGATTGCCATTCAGGCGAATGTCCGGATTGCGAGCTCACGACCAAAGTACGTTGTCGTTGTGGCAATATGGATCGCGAAATCGCGTGCAAAGAATTGCGAACCAAAGCCGACGATGCtcgttgccaaaaaaaatgcacgaaaaaacgttcgtgCGGCAAGCACAAGTGTAATCAGCCTTGTTGCATCGACATTGAGCACATATGTCCGATGCCGTGCAACAAGACTCTCTATTGCGGTAGTCACAGATGTCAATTGTGTTGCCACAAAGGAAGATGTCCGCCTTGTCAGCAAATGAGTTTCGACGAATTGTTTTGCGAGTGCGGAACTTCGGTGATTTATCCACCGGTATCTTGTGGCACCAGACGTCCGACTTGCAATCGTCCGTGCGGTCGCGATCATCCGTGCAATCACGACGTTCTTCACAATTGTCACAGCGATCCCACGTGTCCGCCGTGCACCGTGCTCACCCAAAAGTGGTGTTACGGCAAGCACGAGTTGCGCAAAGCCGTGCCCTGTCAcgtaaacgaaatttcgtgcgGTTTGCCGTGCAACAAACCGCTCACGTGCGGCCGTCACAAGTGCATAGCTCTTTGTCACGCGGGTCCGTGCGAGAAACCCGGTCAGGTTTGTTCGCAACCGTGCGTCACGGCTCGTGAGATGTGCGGCCACATTTGCGCGGCCCCGTGTCACGATGGCAAGTGTCCCGACACACCTTGCAAGGAAATGGTCAAGGTGACGTGCACTTGTGGTCATCGAAGCACGACGAGAGCGTGTGCGGAAAATTCGCGTGATTTTCAACGCATAGCCAGTGGAATATTGGCGAGTAAAATGGCGGACATGCAACTCGGACACTCGGTCGATTTGGAAGAGGTTTTCGGTCAGGGTGCCAAAAAACTCAATCAATTGAAGACCCTCGAGTGCAACGACGAGTGCAGAATAATCGCGAGAAACACGAGAATCGCTCTGGGTCTGCAGATCGTGAATCCCGACGTCAGTGGCAAACTCATGCCCCGATACACGGAATCCATGAAACAATGGGCGAAGAAGGATCCGCATTTTTGTCAAATGGTTCACGATCGTCTGACCGAACTCGTGCAATTGGCCAAaacttcgaaacaaaaatcccGAAGCTATTCGTTCGACAGTATGAATCGTGACAAACGTTATTTCATACACGAATGTTGCGAACATTTCGGATGCGAGAGCCAGGCTTACGATCAGGAACCGAAGCGCAATGTTGTTGCAACTGCGATTAAAGataagTGTTGGCTGCCGGCTTACAGCTTGATGGAAATAGTTCAGCGTGAAAACGGTCAGCGTAAAGTACCGCGTCCAATGCTCAACTCGTCCAAACCGAAGTCCACTATgcgGCTATCGGAGGTGCTATCTTCAACTGCCAGGGCAAGTCAGAAGCTTCAACCCTCAGCTTCGTCCTCAAAATCACCGGAACCGgaaatcgattatttcgattttccgaatgaaaaatttggaaaattcggcAATGTTTAA
Protein Sequence
MATWDGSDQAGPPDDPNFYLYGRPTNAAAAANPRTWDYYANAGNGGYSHGSMGLYAQNNIPMSAQIFQGAPYQEPRYVASVNDTPTIAADQSCYFENNRQMQKNSCNSSRYSNQQFNNTQHKYSNLHAGASEFVPSSKIMQKNSSPTYYNNDGDVHHNDYAFENSQGSSNVFFNDNRNRTNDRRYDNTKNSNSYRGGNYYKGQRNRGYENQYNAPRGNDTTTAVPESIASVNDRVDESAYRGSKPQRARSHGRFQNDRYSNQTRQQYEKSRPDRRKMMTDTWPNSSEATNENFITKDEDNLNPGGYGNRGKWTRNDRRFTTDRHHGINKTHQSTNGYDESQPYEAQTSVGASSSSSRKELPHHRQTERTSRNDRGRGKQRDGSANYERTGSHSHRDYDGQNDDRDIKFDRNDGAKKSVETRDDESLNWRQKDKLPSRELIIKRNNKEIEFDDDASQRERLTEQLNQGRLECLICCEYIRQNDPVWSCNNCYHVLHLKCLKKWANSSQGENGWRCPACQNVSLTVPEIYYCFCGKARIPEWNRRDVAHSCGEICGRLRSKNNCVHKCTLLCHPGSCPECIAMVTRNCGCGRTSQSLKCSTTTLVVCDATCDKPLNCNIHNCEKNCHHDDCGVCEKTLHQACYCGKHERDVTCNAEVPTTYSCEEICDKLLACGNHRCNELCHPGDCGECKLQPALVKNCCCGQTPLDVVRNNCLDPVPKCDKVCSKKLKCGQPSDPHTCKIDCHSGECPDCELTTKVRCRCGNMDREIACKELRTKADDARCQKKCTKKRSCGKHKCNQPCCIDIEHICPMPCNKTLYCGSHRCQLCCHKGRCPPCQQMSFDELFCECGTSVIYPPVSCGTRRPTCNRPCGRDHPCNHDVLHNCHSDPTCPPCTVLTQKWCYGKHELRKAVPCHVNEISCGLPCNKPLTCGRHKCIALCHAGPCEKPGQVCSQPCVTAREMCGHICAAPCHDGKCPDTPCKEMVKVTCTCGHRSTTRACAENSRDFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKLNQLKTLECNDECRIIARNTRIALGLQIVNPDVSGKLMPRYTESMKQWAKKDPHFCQMVHDRLTELVQLAKTSKQKSRSYSFDSMNRDKRYFIHECCEHFGCESQAYDQEPKRNVVATAIKDKCWLPAYSLMEIVQRENGQRKVPRPMLNSSKPKSTMRLSEVLSSTARASQKLQPSASSSKSPEPEIDYFDFPNEKFGKFGNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-