Dlae006368.1
Basic Information
- Insect
- Diplazon laetatorius
- Gene Symbol
- lola
- Assembly
- GCA_963662125.1
- Location
- OY759156.1:10655016-10662910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.4e-06 0.00042 20.6 0.6 1 21 7 27 7 28 0.95 2 10 3.4 2.6e+02 2.4 1.1 1 9 37 45 37 48 0.89 3 10 4.9e-05 0.0038 17.6 0.1 3 21 82 100 81 101 0.96 4 10 0.39 30 5.3 9.2 1 23 109 132 109 132 0.93 5 10 1.1e-05 0.00086 19.6 0.2 1 21 193 213 193 214 0.96 6 10 0.012 0.97 10.0 6.5 1 23 223 246 223 246 0.95 7 10 2.3e-05 0.0018 18.7 0.1 1 21 300 320 300 321 0.95 8 10 0.065 5 7.8 6.6 1 23 330 353 330 353 0.95 9 10 3.5e-05 0.0027 18.1 0.3 1 21 468 488 468 489 0.97 10 10 7.1e-06 0.00055 20.2 7.0 1 23 497 519 497 519 0.99
Sequence Information
- Coding Sequence
- ATGGAAAATCCGGCGTCGTACGTGTGCCTGGTTTGCGAAAAATCCTACAAGCGTCTGAAAAATCTGCAACGTCATCAGAATATGGAGTGCGTCGGAATCGAAAAACAATATCGCTGCACATTTTGTAAAAAATCCAGGCCCCGAGGACGTGTTTGGAATTACAAAAATCCAACCGAACCGAAGGTCCGCGTGGTCGTGAGCGGACGTCAATTCGCCATGGCAAATCTTCCCAAACCTCACGGCTGTTTGGAATGTGGAAAATCTTACAATCGTCCGGAATCATTGCTGCGTCATCAGAAGTGGGAATGCGGCGACAAACGACAATTTCACTGCAACTTCTGTCCCAAAACCTTCAATTACAGATTCGTGCTGAAggatcattatcatcatcgtcacaAAGTTCCGAAACATTTGgtcgaacaaattttcaaacaatcgaAAAAGGAGCAAGAGCTCAAACAATTCGACTCCATGAGCCGATATCGTGATAACGATTTGAACTCATCGCAGACGAAACCCGGATTTATCGTCGAACGTCCGGCCACAATGGATCACAGCGGTCACGTTATATCATCGTACGTTTGTTTGGGATGCGGAAATTCTTACACACGTCTCGACAATCTTCGACGTCATCAGAAATGGAAATGCGGCAACAAggaaaaaacttttcactgcaaattttgtccgaaaaaattttattacaaattcGGACTGAAGGATCATTATCACATCGGTCACAATGTGCCGAAAGAGGTGGTCGCAGGATTGTTAAAATCGGACGATAACGATCGATGCGAAGGAGGAATTCCCGGTGCACATGGAAACGAAGTTGTGGATTCGACGCCAAGCACGATTGGACGTAAACGCAGACTCGTCGTGGACGAATCGACGACGATGTACGTCTGTCAGACTTGTGGAAGATCGTACGCCGTTGAACGCAATCTCAAACGACATCAGAACATTCAATGTGGCAACAAGGAGAAGACTTTTCATTGTCGTTTTTGtacaaaaagtttttatttcaaagCCGACATGAAATCACATTTGTATCGAAAGCACAAACTTCCGGCGAAATTGCTTACGGAAATTCTCAAAGAAACGCGCACCCCGAAACAACagCGCAAGTATTCGCCGGGAGCAGCGATAGATTGGTACTATCAGTATCAATCGTTGTATCTGCGTCTGTTGGCGGAAAACGAGATGTCGGAACCCGTGTCGGTGGTGAACGATCGCGTAATCGAAGCGGCCAACGATCCGGACAACAACGATCATCTCGTGGATTATTTGGACGTGGTGAAGCTGCATCGGCAACAAACGGACAGTTCGAAATCCGACGTCACAACGGATCCGAACAGTTCGCAAACCAATGTACCGGGTCTGAGCCCGTCCGACGGTTTCGGATACGTTTGCGCGCGTTGCGGAAACGTTTACTCGCGACCGCACTCGTTGAATCGCCACATCAGATTCGAGTGCGGCGTCGAGCCGCAATTCGAGTGTCCGATATGTCACAAAAAGtccaaacacaaacacaatcTCGTGCTACACATGCGAACGCACAAAAAACCCGCGTAG
- Protein Sequence
- MENPASYVCLVCEKSYKRLKNLQRHQNMECVGIEKQYRCTFCKKSRPRGRVWNYKNPTEPKVRVVVSGRQFAMANLPKPHGCLECGKSYNRPESLLRHQKWECGDKRQFHCNFCPKTFNYRFVLKDHYHHRHKVPKHLVEQIFKQSKKEQELKQFDSMSRYRDNDLNSSQTKPGFIVERPATMDHSGHVISSYVCLGCGNSYTRLDNLRRHQKWKCGNKEKTFHCKFCPKKFYYKFGLKDHYHIGHNVPKEVVAGLLKSDDNDRCEGGIPGAHGNEVVDSTPSTIGRKRRLVVDESTTMYVCQTCGRSYAVERNLKRHQNIQCGNKEKTFHCRFCTKSFYFKADMKSHLYRKHKLPAKLLTEILKETRTPKQQRKYSPGAAIDWYYQYQSLYLRLLAENEMSEPVSVVNDRVIEAANDPDNNDHLVDYLDVVKLHRQQTDSSKSDVTTDPNSSQTNVPGLSPSDGFGYVCARCGNVYSRPHSLNRHIRFECGVEPQFECPICHKKSKHKHNLVLHMRTHKKPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -