Dlae006375.1
Basic Information
- Insect
- Diplazon laetatorius
- Gene Symbol
- lola
- Assembly
- GCA_963662125.1
- Location
- OY759156.1:10682256-10689661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.13 12.7 0.4 3 19 59 75 58 75 0.98 2 13 0.0044 0.34 11.4 7.4 1 23 94 117 94 117 0.94 3 13 0.0073 0.56 10.8 1.1 1 21 123 143 123 144 0.93 4 13 0.00011 0.0082 16.5 4.0 1 22 153 174 153 177 0.90 5 13 7.3e-05 0.0056 17.1 1.4 1 23 245 268 245 268 0.94 6 13 0.057 4.4 7.9 0.4 2 20 275 293 274 295 0.93 7 13 0.00034 0.026 14.9 2.2 1 23 304 328 304 328 0.90 8 13 0.00026 0.02 15.3 0.3 1 21 356 376 356 377 0.94 9 13 0.00093 0.072 13.6 5.8 1 23 385 408 385 408 0.92 10 13 0.1 7.8 7.2 0.1 3 21 437 455 435 456 0.94 11 13 8.1e-05 0.0063 16.9 4.0 1 23 464 487 464 487 0.97 12 13 2.7e-07 2.1e-05 24.7 2.6 1 21 526 546 526 547 0.96 13 13 3.7e-05 0.0028 18.0 1.9 1 20 555 574 555 578 0.90
Sequence Information
- Coding Sequence
- ATGAATTATCACTGGGAGTGGTTCGAGTTTGATTCCGGATGTCGAATAGCCTGGCCGACGATAAGCGGCTGGGCCAACGACGAAGCTTCAGATAAAGTACctGAGGAATTCGGATTGAACATTCGCGAAATAATCGGTGGAAATTTCGATGGATCGGACGAAAAACCACAACTCTGTCCAAACTGTGGCATAAGTTTCAGCCACGTCACCGATTTGTTCCGACACTGCGAAAACGATTGCATTCCAACTCGTGCTCTTCGTGATTACAAATTACGCAAATACGAGTGTCATCATTGTCGAGCACGTTTTCGCATGAAGCACCATCTGACGAATCACGTGGTATCGGCTCACAGCGGAAGAAAATCGTTCGCTTGTCCCCATTGCAACAAGGCTTATCACTGGAAGACGTCCCTGATAAGACATCAATCGTCGGAATGCGGGAAAAACCCGAAACGTTACTATTGCGAAGTTTGTGACATGACCTTCGTGCACAAACATCATCTGACCAATCATGCGACCACCGCTAATCACATCTACATGGCATCGCACACCGctaCGGGATTTAAATTGGAGATTAACGACGTAACCCGTGAATGTTTTGATGGACCGGATGAAAGATCAAACTTCTGTGGAAACTTTGGCAAAACTTGCAGCAACGTTATTGCACTGTCAAGACACTGCAATAACGATTGCATTCCGACGCATGATCCTCGTGATTATGGGTTACGTAAATACGAGTGTCACAATTGTCGAGCAGGTTTTGTCAGAAAGTCCCATCTTACGGTTCACGTGGTATCGGCACACAGTGAGAGTAAATCGTTGGTTTGTACCGTTTGCAACAAGGCTTATCACTGGAAAAGGTCCCTGCAAAGACATCGGGACTTGGAATGCGGCCGAACGGGAAAACGTTTTGCTTGTGAAGTGTGCGACGTTAGCTTCAAACACGAACGTCATCTGACCTATCATTTGACCACCGCTAATCACATCTACAGTGaatattgGATACCACAAAAATTGATcgagaatcaattttccaaaaataatcgACGTTTCGTTCCGAAACCTCACAACTGTCCGTCTTGCGCTAAATCGTACGCTTCGAGAGATTCATTGCTGAGACATCAGCGAATCGAGTGCGGTCAAGCGCCGAAATTCGTTTGTCACATATGCCGAGCTAGATTCAAACACAAGCATCATCTGATCAATCATACGGCCGCGGTTCATCATGTTATCTCCTTTCGTTATTTGCCGAGAATCGAGACGGAGCGATCGTGTCCACGTTCGTCGTTCAAGCCAAAACCTTTTGGTTGTTCAGCGTGCGGAAAATCGTACACTTGGAAGATATCGTTGTCGCGTCATGTGCGCGACGAGTGCGGCAAACCGCCGCAATATTTCTGCGTTTATTGTCAGAAACGTTTTCAATCGAGAAGCAGCTTTCAGAGACATCTGAGCACGCAACACAACGCGAAGATGTCCAAACCCGAACTTCCAGAGGAATCacggacaacgacgacgaccacgacgacgacgaacaagCATCACAATTCGCGACCGGGCAAACAATTCCGACGTCCGTTTCCCTGTCACAATTGTGGTAAATCTTACACGAGGAAGGACACACTGAGACGTCATCAGCGTTACGAATGCGGCAAGAGCCCGCAGTACATATGTTACATGTGCAAAAAGggattcaaacaaaaatccaaCTTTCAACGTCACAACGTCAACATTCATGGATTTCGTTTCTGA
- Protein Sequence
- MNYHWEWFEFDSGCRIAWPTISGWANDEASDKVPEEFGLNIREIIGGNFDGSDEKPQLCPNCGISFSHVTDLFRHCENDCIPTRALRDYKLRKYECHHCRARFRMKHHLTNHVVSAHSGRKSFACPHCNKAYHWKTSLIRHQSSECGKNPKRYYCEVCDMTFVHKHHLTNHATTANHIYMASHTATGFKLEINDVTRECFDGPDERSNFCGNFGKTCSNVIALSRHCNNDCIPTHDPRDYGLRKYECHNCRAGFVRKSHLTVHVVSAHSESKSLVCTVCNKAYHWKRSLQRHRDLECGRTGKRFACEVCDVSFKHERHLTYHLTTANHIYSEYWIPQKLIENQFSKNNRRFVPKPHNCPSCAKSYASRDSLLRHQRIECGQAPKFVCHICRARFKHKHHLINHTAAVHHVISFRYLPRIETERSCPRSSFKPKPFGCSACGKSYTWKISLSRHVRDECGKPPQYFCVYCQKRFQSRSSFQRHLSTQHNAKMSKPELPEESRTTTTTTTTTNKHHNSRPGKQFRRPFPCHNCGKSYTRKDTLRRHQRYECGKSPQYICYMCKKGFKQKSNFQRHNVNIHGFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -