Dlae001809.1
Basic Information
- Insect
- Diplazon laetatorius
- Gene Symbol
- -
- Assembly
- GCA_963662125.1
- Location
- OY759153.1:335433-339308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.14 11 6.7 0.1 2 23 213 235 212 235 0.91 2 19 4.6 3.6e+02 2.0 0.3 1 23 247 270 247 270 0.89 3 19 0.028 2.2 8.9 4.5 1 23 284 307 284 307 0.94 4 19 0.00016 0.013 16.0 5.9 1 23 313 335 313 336 0.93 5 19 0.12 9 7.0 0.7 2 23 342 364 341 364 0.93 6 19 4.9e-05 0.0038 17.6 1.0 1 23 369 392 369 392 0.98 7 19 8.2e-07 6.4e-05 23.2 0.5 2 23 399 420 398 420 0.96 8 19 7.6e-08 5.9e-06 26.4 0.3 1 23 426 448 426 448 0.97 9 19 7.4e-05 0.0057 17.0 1.0 1 23 454 476 454 476 0.98 10 19 3.7 2.9e+02 2.2 3.6 1 23 529 552 529 552 0.95 11 19 1.3e-06 0.0001 22.5 1.2 1 23 558 580 558 580 0.97 12 19 0.1 7.9 7.1 5.2 1 23 586 608 586 608 0.96 13 19 1.2 90 3.8 0.3 1 23 614 636 614 637 0.93 14 19 0.0001 0.0079 16.6 1.8 1 23 643 666 643 666 0.97 15 19 5.2e-05 0.004 17.5 2.1 1 23 679 702 679 702 0.98 16 19 0.0014 0.11 13.1 0.7 1 23 713 735 713 735 0.95 17 19 9.8e-07 7.6e-05 22.9 0.3 3 23 743 763 742 763 0.97 18 19 5.5e-07 4.2e-05 23.7 1.1 1 23 769 791 769 791 0.98 19 19 0.00036 0.028 14.9 2.8 1 23 797 819 797 819 0.98
Sequence Information
- Coding Sequence
- atgaaaaaatggcAAATATTGGAATTCGATGGCAAACCGTATTACGCATTTGTTCCGGAAAACGACGATCCACTGAACACCGAAGAAATAACGAATCTCGATGTGACGACGGACCCGGAATTTGGTGACCCATCGTCGCCCGAAAACATGGACGACAATGATCATTTGAATTACGacgataacgatgataacgaCGACGAATCGTTCGACAATCCTCAAACCGACGATAACAACGATTACAGTCCCAATGAAGACGACGAACAACCGGAAACAAAACCCACAATCTTGACCCTAAAAAATACGACCGAAAAAACTCCAATGGGCGACCTCTATCAGGTCAAGGTCGAAGGCACGACGGTGACcttggaaaaattgtcggaaaattcgtcgactcaatcaatttccatgcAAAGATTGtcaaaattgataaaacaaGAACCCACGAACGATAATTACGAAGCAGAAATGATCGAAGAGGGATTCGAAGAAATAGTCGATGAAGACGAGCTTGCAACGGATTTGGAAGACGATGAGGAAGCAATCACGACGATGGAACTTTGCGAAACGAGTTTGTCGCGCGAAACCGACGATCGAAGACCGAAAATCGACGAACGAAGAGTCGAAGGCGGTGCTTTGAAGTGCAAAGCTTGCGCCGAAAGCTTCGGCTCGGCGATGTCGTTTCGCAAGCACGTGGCTTGgtcgcacaaaaaaaaagtttgcataCGCGATCAAGGAGCTTACATATGCGCGGTTTGTGACTTTCGTACCCTGAAAAAAGCTTCTTTCGCCGATCATCTCGCTCGCAAGCACGAAACTTGGACGAAAAAAGGTCGCGATTCAAGGTCGTTGTATCCCTGCGAAGCTTGCGGTTTTgtttgtcgttccaaacactCCCTGCAATCGCATTTCACGCGAAAGCACACGGAAAATTACGAACACGATTGTCcgcattgcgaaaaaaaattcaaggtcAAAGGCGATCTGACCAATCACGTGCGTTTTCATCACAAAGAAAAACCGTTGAATTGCGAcgtttgtggaaaattgtgtCAGAACACCGGATCATTGTACGTTCACAAAAAATGGGCCCATTACAAACCAAAGTACGAGTGTAATATTTGTAAAAGACGAATGGTCACGCAACAAAATTTGAATCAACACATGTTGACGCAACACGAACAGAGGGAGAAGATTGTTTGCGCGTTGTGCGGAAAAACTTTTACGAAGAAGGATTCTTTCAAGAGACACATGGCCGTGCATACCGGTAAAAAACCGCATTCGTGTCCGATTTGCGGAAAACCGTTTGCCAGACAGTCGCAGTTGAGACAACACGTGCTTATTCATACCGGGCAGAGACCTTTCGTTTGTGACATTTGTGGAAAAGGTTTTACGCAAAAACCCGGATTGATTTGTCATCGAAAAACGCATCCCGGACCGTTACCGCCTTTACCGGTTATGCCGATTGCCGATCTCGTTCGCGATTTTATCGCACAGACGGAGGAGAGCCAGAGTCAGGATTTGGACGTCGAATCGTTACCGATCATCGCCCCAGGCCGAAGAACCGTGAAGAAATCCCGTGCGGCTCACAAGTGCGGCAAGTGCAACGGTCTGTTCTTTCACATGACGAAACTCGTGGAACATCTGAAAAACGTTCACGGAATCGAACGAGCGTTTCACTGCGACGAATGCGGCAAAGCTTTCCGCAGTCCGTCCAACATAACACGTCACAAATTGATTCACGCGGGAACGAAGAATCACGTTTGCGATTTGTGCGGTTGGGCTTGcaatcaaaaaacaaatttggattttcatcatcgtcgtcacgTGATGGATTACGCTTACAATTGCGAACCATGCGCCAAAGGTTTCATTCTGAAAACCGAATACGACGAACACATGGACATACATCAcggtggacaaaaaaaatttcattgcgaaatttgtttgaaaatttacgGTTACAAAAGAAATTTGAACGCTCACATGAGATCGAATCATCCGGAATTCGTCGTCGATCAATTGTCAACGATAAAATACACTTGCAAACTTTGTACACGCGGTTTTGGCAGTTCGAGATTGTTGAACAATCACATGAAGAAACGTCACGGTATGATTAATCCGAAAattttgccaaattttttgtGCGATCTTTGTGGGACGAAattgtcgtcgaaaaaatctttGGACGCTCATCGTCGATTGCACACGGGTGAAAAAATTGCCAATTGCGACATATGCGGAAAAGGTTTTACCAACAGGGACGGTCTTAGGGTTCATCGACGCGTGCACACCGGTGAAAAACCTTACATGTGCAATCAGTGCGGCAAAGATTTTACTCAGAGAACGTCGTTGGTCATTCACATGAGATATCACAACGAGGTGAAACCTTACAGGTGTCGGAATTGCGGAAAGGGTTTTGTCACCGGACATTTTCTCAAGAAACACGAAAAGATTCATTGTCACGATGCGACGACGACCAATTTAAATTTCGGTCCCCTTTTGAATCCTCAataa
- Protein Sequence
- MKKWQILEFDGKPYYAFVPENDDPLNTEEITNLDVTTDPEFGDPSSPENMDDNDHLNYDDNDDNDDESFDNPQTDDNNDYSPNEDDEQPETKPTILTLKNTTEKTPMGDLYQVKVEGTTVTLEKLSENSSTQSISMQRLSKLIKQEPTNDNYEAEMIEEGFEEIVDEDELATDLEDDEEAITTMELCETSLSRETDDRRPKIDERRVEGGALKCKACAESFGSAMSFRKHVAWSHKKKVCIRDQGAYICAVCDFRTLKKASFADHLARKHETWTKKGRDSRSLYPCEACGFVCRSKHSLQSHFTRKHTENYEHDCPHCEKKFKVKGDLTNHVRFHHKEKPLNCDVCGKLCQNTGSLYVHKKWAHYKPKYECNICKRRMVTQQNLNQHMLTQHEQREKIVCALCGKTFTKKDSFKRHMAVHTGKKPHSCPICGKPFARQSQLRQHVLIHTGQRPFVCDICGKGFTQKPGLICHRKTHPGPLPPLPVMPIADLVRDFIAQTEESQSQDLDVESLPIIAPGRRTVKKSRAAHKCGKCNGLFFHMTKLVEHLKNVHGIERAFHCDECGKAFRSPSNITRHKLIHAGTKNHVCDLCGWACNQKTNLDFHHRRHVMDYAYNCEPCAKGFILKTEYDEHMDIHHGGQKKFHCEICLKIYGYKRNLNAHMRSNHPEFVVDQLSTIKYTCKLCTRGFGSSRLLNNHMKKRHGMINPKILPNFLCDLCGTKLSSKKSLDAHRRLHTGEKIANCDICGKGFTNRDGLRVHRRVHTGEKPYMCNQCGKDFTQRTSLVIHMRYHNEVKPYRCRNCGKGFVTGHFLKKHEKIHCHDATTTNLNFGPLLNPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -