Basic Information

Insect: Diplazon laetatorius
Gene Symbol: PRDM5
Assembly: GCA_963662125.1
Location: OY759153.1:314482-320726[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0093 0.72 10.4 0.4 1 23 13 35 13 35 0.98

2 27 8.8e-07 6.8e-05 23.1 3.0 1 23 41 63 41 63 0.97

3 27 0.004 0.31 11.6 1.8 1 23 68 91 68 91 0.97

4 27 1e-05 0.0008 19.7 1.7 1 23 97 119 97 119 0.98

5 27 5.5e-06 0.00043 20.6 0.4 1 23 125 148 125 148 0.97

6 27 0.09 7 7.3 1.7 1 23 159 181 159 181 0.84

7 27 0.00015 0.012 16.1 3.3 1 23 185 207 185 207 0.95

8 27 4.5e-05 0.0034 17.7 1.4 2 23 214 235 213 235 0.96

9 27 1.3e-05 0.001 19.4 0.8 1 23 241 263 241 263 0.98

10 27 0.00018 0.014 15.8 1.2 2 23 427 448 426 448 0.96

11 27 7.8e-05 0.006 17.0 0.5 1 23 454 476 454 476 0.96

12 27 0.41 32 5.2 3.5 1 23 483 506 483 506 0.92

13 27 2.6e-05 0.002 18.5 3.5 1 23 512 534 512 534 0.97

14 27 1.1 83 3.9 3.9 2 20 540 558 539 562 0.82

15 27 0.00031 0.024 15.1 0.4 1 23 569 591 569 591 0.94

16 27 2.8e-07 2.1e-05 24.7 0.9 1 23 595 617 595 617 0.99

17 27 0.037 2.9 8.5 1.1 1 23 623 645 623 645 0.94

18 27 5.7e-06 0.00044 20.5 0.6 1 23 651 673 651 673 0.99

19 27 0.0021 0.16 12.5 3.8 1 23 743 765 743 765 0.98

20 27 0.0039 0.3 11.6 6.7 1 23 771 794 771 794 0.95

21 27 0.061 4.7 7.9 3.7 1 23 801 824 801 824 0.94

22 27 0.00018 0.014 15.9 1.1 1 23 830 852 830 852 0.97

23 27 0.0017 0.13 12.7 0.2 2 23 858 880 857 880 0.92

24 27 2.4e-06 0.00018 21.7 1.8 1 23 887 909 887 909 0.97

25 27 7.2e-06 0.00055 20.2 2.6 1 23 913 935 913 935 0.98

26 27 1.5e-05 0.0012 19.2 0.9 1 23 940 962 940 962 0.96

27 27 9.8e-06 0.00076 19.8 0.4 1 23 968 991 968 991 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0093	0.72	10.4	0.4	1	23	13	35	13	35	0.98
2	27	8.8e-07	6.8e-05	23.1	3.0	1	23	41	63	41	63	0.97
3	27	0.004	0.31	11.6	1.8	1	23	68	91	68	91	0.97
4	27	1e-05	0.0008	19.7	1.7	1	23	97	119	97	119	0.98
5	27	5.5e-06	0.00043	20.6	0.4	1	23	125	148	125	148	0.97
6	27	0.09	7	7.3	1.7	1	23	159	181	159	181	0.84
7	27	0.00015	0.012	16.1	3.3	1	23	185	207	185	207	0.95
8	27	4.5e-05	0.0034	17.7	1.4	2	23	214	235	213	235	0.96
9	27	1.3e-05	0.001	19.4	0.8	1	23	241	263	241	263	0.98
10	27	0.00018	0.014	15.8	1.2	2	23	427	448	426	448	0.96
11	27	7.8e-05	0.006	17.0	0.5	1	23	454	476	454	476	0.96
12	27	0.41	32	5.2	3.5	1	23	483	506	483	506	0.92
13	27	2.6e-05	0.002	18.5	3.5	1	23	512	534	512	534	0.97
14	27	1.1	83	3.9	3.9	2	20	540	558	539	562	0.82
15	27	0.00031	0.024	15.1	0.4	1	23	569	591	569	591	0.94
16	27	2.8e-07	2.1e-05	24.7	0.9	1	23	595	617	595	617	0.99
17	27	0.037	2.9	8.5	1.1	1	23	623	645	623	645	0.94
18	27	5.7e-06	0.00044	20.5	0.6	1	23	651	673	651	673	0.99
19	27	0.0021	0.16	12.5	3.8	1	23	743	765	743	765	0.98
20	27	0.0039	0.3	11.6	6.7	1	23	771	794	771	794	0.95
21	27	0.061	4.7	7.9	3.7	1	23	801	824	801	824	0.94
22	27	0.00018	0.014	15.9	1.1	1	23	830	852	830	852	0.97
23	27	0.0017	0.13	12.7	0.2	2	23	858	880	857	880	0.92
24	27	2.4e-06	0.00018	21.7	1.8	1	23	887	909	887	909	0.97
25	27	7.2e-06	0.00055	20.2	2.6	1	23	913	935	913	935	0.98
26	27	1.5e-05	0.0012	19.2	0.9	1	23	940	962	940	962	0.96
27	27	9.8e-06	0.00076	19.8	0.4	1	23	968	991	968	991	0.97

Sequence Information

Coding Sequence: atgcgaaaaaaaaaaaaaattgacgaaccGGAAATTTTCGAATGCGAAACTTGTTCGTTGTTGTTCATACGTCGTGGCCCTTATCTTCGTCACATGATCAAACACAGCACGGTGAGATCGCACAAATgcgaaatttgcgaaaaatcattcaaacgaaaatccgaGCTGAAAAGTCACGTGCAATTGCACAGCGgtatgaaatttcattgcgacgagTGCAATTTCGTGACTACGAACAAAGTTTCCGTTCGCAGTCACGTGCGTCGCGTTCATCAACGTGATTTTCGTTACAAGTGTGAgaattgcgaaaaaagtttcatgTCGAATTCCGAATTGAAGGATCATCGTACGAGTCATTTGGGAACCAAGAGCTTCATATGCGAAATTTGCGGAAAGGGTTACATGCAAAAATCACACTTGGTCGCTCACAAACGCGTTGTTCACGGAGTCGtgcaaaaatcattgatcaaGGAACATCATTGCaaaatttgcaataaaaattttgccaGCGAATACATATTGTCGAATCACGGTGGAGTGCATTCGCGAAAATTTTTGTGCACTCATTGCGGCAAGGAATTTGCGACGAATCACGGTTTGCAGTTGCACTCGAGGCTGCACACCGGTGAACGTCCGTTGAATTGTCAGTATTGCGAAAAAACTTTTACGAGACCGAACACACTGAGACTTCACAATCTCACGCACACCGGGGAACGTCCGTACGTTTGCGATTTGTGCGGACAGAGCTTTACGCAACGGAGCAGCATGATCGGGCACAGGAAAAAACATCCGGGTGTTCATCCGCCACCGCCTCCGACTATTCTCAGCAAATCTTGCGGTGGAAATTATTcgcagcagaagcagcaacGACATTCCACgtACAATCCGTTGGACCCACTGGGTCCGGCGTTTCTGACGGTTAAATTAGGAGACGATTACTTTCGCATGCCCAAGTCGTTGAGCTTGTTCATGATGAAGCAGGAACAACCGTCCCAgtccaacgacgacgaagaacaaCCACAACCACAACCaccaccatcatcatcatcgccaCGACAAATCGTCGAACCGACGATCAAAGTTCGCAAGGATTTATCATCGTCCACGAAGATCACGAAGCCGAAAAGATCATCGCGAGCCGAAAGAGCCACGAAAAGAAGATTCGAAGAAGATGACGAAAACTTTCGAGACGTCGACGATGGTTTCGACGACATGGACGACGTTCCGCTGGACTTTCGACAGTACAAAGCCACCCACAGAGGCTCGAAGAAATCTCTTACCTGCGAAATTTGTTACTTGATATTCGATCGCAAGAGCAAACTCACGAGTCACATGTTCAAACACAGCGATTCGCGTCCTCACATTTGTACGATATGCTCGAAGGGCTTCAAAACCGGAGCTTATCTGGCTCGTCACATGGACATACACGACGAAACCGTGCACGAACACGCTTGTCAATTGTGCGATTTCAAAGCCCGAACCAAACCCTATCTGAAAATTCATCACATAAGAAAACACACCgacgattataattttcattgtcggGATTGTGGAAAACGTTTCAAAGTCCAATCGGATTACACGACTCACATCAAGGATCACGATACCGAATCATGCGTGTGTGACATTTGCGGCTCGTCTTATCCGTCCAAAAGTTCGTTGTACTTTCACAAACAttacaaacacaaacaaaaagtCAAAGAGTTCGAATGTgggatttgtaaaaaacgttTCAAGAGCCAGAAGAACGTTGATGCTCATGCGGAATTGCACAAAATGAAATACGTTTGCGAACAGTGCGGAATGGAGTTTAAATCGAAGTACGGATTGACGAAACATTTGCGAACGCATTCGGGTGAGAAATCTTATTTGTGCGCGATTTGCGGAAAAACTTTTGGATGTTTGAGCTCGCAGAAGATTCATCTGTTGACTCACGTGGGCGAGAGACCGTACGTTTGTGATATTTGCGGACAGAGTTTCACGCAGAGGTCGCCCATGATGCTGCACAGACGGAAACATCCGGGCACGCATGCGCCACCGCCGCCGATTAAAATTACGAATTTGTTGCACGGCGTGCaggataaaattattgttaataagaAACCATCGAAGTTCGTGGAGATAACGATAAAGCAAGAAACGTTGGACGATTTTACAAATTCAAATGACGACggcgaagaagacgaagacgatgatgaaaaatccgTAATTGAGACGGAAAAAACTTACGACTGTCGCACATGCGGAGCTTCTTACAAACGTCGTTGTCTCTACAACAAACATTTGTTGACCCACAGCAATTTGCGTCCCCACGAGTGCGTTCACTGTCGAAAAAGATTCAAATACAAATTCGGTCTAACGCGTCACGTGAAACAACAGCACAACGATTCCGCGCCCTCCTTCAATTGCAAAATTTGCGAATTCACAACAAAACACGAATATTATTTGCAAATACATTTTGCCCGTAAACACACGAACGATTGCAAATACAAATGTCACATAtgtgaaaaaactttcaaagtCGTGGGTCCTTACAGAGTTCACATGAACGATCACGAAAGCGGTCCTCAAGTTTGCGACATATGCGGAATTTCTTATCCCAACAAAACTTCGTTGTACGATCATCGTTATTACAAACACGTGGAAAAGAATCACGCGTTTACCTgcgaaatttgtaaaaaaacattttccacggcgaaaaatttgtcgaaccATCGTGAACAACACAATCAGACTTTCGTGTGCGAGGAgtgcggaaaaaaattcacgaaaaaacccTGTCTGGCCAAACATCGCAAGgttcatcgtgaaaaaatgcatttttgtcCGATTTGCGGACGCGCGTTTGCGAATAAAACCACTCAGAGAGTTCACATGATCACGCATTCGGGCGTGAGACCTTATATATGCGACGTTTGCGGATTGAATTTCACTCAGAGATCGTCGTTGATGATACACTGGAAGAAAACGCATCCGGACGCGATACAGGCGCCGCCACCGGTCACCCTGAGAAACATCGTTCAGCAGACCAATCCGCGTGACGATTGA
Protein Sequence: MRKKKKIDEPEIFECETCSLLFIRRGPYLRHMIKHSTVRSHKCEICEKSFKRKSELKSHVQLHSGMKFHCDECNFVTTNKVSVRSHVRRVHQRDFRYKCENCEKSFMSNSELKDHRTSHLGTKSFICEICGKGYMQKSHLVAHKRVVHGVVQKSLIKEHHCKICNKNFASEYILSNHGGVHSRKFLCTHCGKEFATNHGLQLHSRLHTGERPLNCQYCEKTFTRPNTLRLHNLTHTGERPYVCDLCGQSFTQRSSMIGHRKKHPGVHPPPPPTILSKSCGGNYSQQKQQRHSTYNPLDPLGPAFLTVKLGDDYFRMPKSLSLFMMKQEQPSQSNDDEEQPQPQPPPSSSSPRQIVEPTIKVRKDLSSSTKITKPKRSSRAERATKRRFEEDDENFRDVDDGFDDMDDVPLDFRQYKATHRGSKKSLTCEICYLIFDRKSKLTSHMFKHSDSRPHICTICSKGFKTGAYLARHMDIHDETVHEHACQLCDFKARTKPYLKIHHIRKHTDDYNFHCRDCGKRFKVQSDYTTHIKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKQKVKEFECGICKKRFKSQKNVDAHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGTHAPPPPIKITNLLHGVQDKIIVNKKPSKFVEITIKQETLDDFTNSNDDGEEDEDDDEKSVIETEKTYDCRTCGASYKRRCLYNKHLLTHSNLRPHECVHCRKRFKYKFGLTRHVKQQHNDSAPSFNCKICEFTTKHEYYLQIHFARKHTNDCKYKCHICEKTFKVVGPYRVHMNDHESGPQVCDICGISYPNKTSLYDHRYYKHVEKNHAFTCEICKKTFSTAKNLSNHREQHNQTFVCEECGKKFTKKPCLAKHRKVHREKMHFCPICGRAFANKTTQRVHMITHSGVRPYICDVCGLNFTQRSSLMIHWKKTHPDAIQAPPPVTLRNIVQQTNPRDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -