Dcar020508.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055263.1:12870769-12873906[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.3e-05 0.004 18.0 0.4 1 20 88 107 88 108 0.96 2 10 0.011 1 10.5 4.6 2 23 202 224 202 224 0.91 3 10 7.7 7e+02 1.5 7.4 3 23 380 401 379 401 0.86 4 10 6.7e-05 0.0061 17.4 0.3 3 23 537 558 535 558 0.95 5 10 0.64 59 4.9 0.0 3 23 583 604 582 604 0.87 6 10 0.008 0.73 10.9 3.6 2 23 653 675 652 675 0.96 7 10 0.085 7.7 7.7 3.7 2 23 689 711 688 711 0.92 8 10 0.00012 0.011 16.6 0.6 2 23 765 787 765 787 0.96 9 10 0.047 4.3 8.5 0.2 1 23 855 877 855 877 0.98 10 10 7.9e-06 0.00072 20.4 0.4 1 23 885 908 885 908 0.97
Sequence Information
- Coding Sequence
- ATGACATCCGTCACACTACCGTCAAGTTCGGGTACGTTGAATGGAGGATATTCATCGTCAGTGACGGAAAAGTTACCAACTACTCAACCAGATTTTGATGCATTACGCACAATAAAACGATCCCTATGTTTAACATCTACAGAATCATGCAAAAAACGTCGGAAGCAGTCGACTCCTATCAGAATATCTACAAGTGAAACAGAAAGTCAGAACGCTAACTCTCTTGAAGGTAAGCCCATCGTGCCTTCCCCTGAACCCAATCATCGTTGTTCAATTTGCCAACAGTCCTTTTCATATCCAGAGCAACTGCAAAATCACATCATATGCGAACATCCTCTTTTAGAGTGCAAAAAGGAGCCCGAAGATCATCCTACAACACCATCTTCGGTTTCTTACGTGGATCAATCAGAAACACCAATGGGTTTATCCATTATGCGCTCTGATATACCGTGGGTAAATGAGATTCAAAACAAAGAGTGGATTGGTTCCAACTTATCAAACCTTTCTTTCAACCCAGCCAATCCAATGTTTATGACGTTACCTCCATATTCACATACAGATAATATATCCCTAAAACCCATTCGGATCTTTAATCCAGATGCTTACTGTGATCTTTGCAACaaagaattttgtaataaatattttcttaaaacaCACAAAGCAAACAAACATGGAATTTACACGGATAGCTCTTCATCTGAGCCTTTATTAAACTCTGTAACTGTACCGTCAATAACAAGTAACCTTAAGATATCTAATCCCGTGCCAACAACTGTCGAACAACCTACCATAACGAGCGATTCGAAAACTCCTGCGAATATGATTAATgcattcaataatattttccaaaatccaTTTTCAAATCAAGcaaatttatcagaaaatgaAATGAACGAAAATATTGCTATGTCGAATGGAATGTCTTCGTCAAGCGAAAGTGATAAAATTTTCTCAGACGATCCGCACGTTGAAGAAAATAGTAGTCCTTGTATACAAACCGAATCTACCTCAATAAAAAATGATCCAGACGGATTGTTTCATGATACATCGAGTAAATTATCCTCAGATCAAACTAATCGTGAATTAGACTTGTCATATCGTTTAAGGAAAATTGGTGTTATGAACCCTAAAGCATTTTGTGAAATATGTTGTAAggaatattgtaataaatattttctaagaaCTCACAAACTAAAACGGCACGGAATATACATTCCAGACGACAAAGATAAGGACATTAGAAGTGAATGTATGTCAGGCTTTTCATCAAGTAACGTGCAGACGAGTCCTTTAAATCTCATTATGACAGAGCAAGGCAGTTCCGACAGTAAAATAACATCACCCACGAGTATTGGTTGTGATATATGTtgcattaaatttcaaaatgctAGTCTTGCACAATTGCATAATGTCAGCGTCCATGCCAGAGTATCTTCAATAGAACCAGAAGAATGTGACAGATCGCAGCAGGATAGTACCAAAATATCAGAAGGAATCAAATCTAATGAAAAATCGGTGAATCCAGAAACTATTAGTGAAGATTTGCAAAAACTTCAAACAATGATTCTTCAGCTGAACGACATCGATACTGCTAAAGTAACCACGAACTGTGCTATTTGTAACAAAGAATTCGAAAACCGATTTTATCTTCAAGCACATATGCTCTCAGAGCATAGTATGTTGATGGACGAAGGAGATTGTGAAAAAGCGGGTGATACAGAGTTGCGCTCAACTAATAATGCAATGTGCGATATCTGCGGTAAGGAATTACTGAACGTCGAAGAATTATCAAGACATATAGTGGAATTTCATTCAAACCATCAAGTGGCTGCAGATTCTTCGAAAGATGACAATAGTGGATTTACCGGTGGAGATAAATCGTCAAATAGATTGCAAGTTTCTAGTGGACATATCCCAGAACGGCGTGTTTCTATGAACGTTACCCCCACCAGTAGCTACTGTGAAATTTGCAACAAAgaattatgtaataaatatttcatgaaaacaCATATGCAAAGAATGCATGGGATCGAAATAGAGAATGGAGCACAAATTGGAGGTGTCGTTTGTGACATATGCAACAAGGAATTATGTAGCAAATACTTCTTACGTGTTCATAAACATAACACTCACGGTATAATTGAATACGGAGGTAATTTATTGCCTCCAAGGAAATCAGATGGAGAATCATCAGTCTTGCCATCACCTTCCACTCCACTAGAAACGGATTCAACTCTAAAACCAACCGACTTAGCGGATTTAAGTCACAGATACTTCACTCATTTTACCGAAGTCTGTACTATATGCAGTCGGAGATTTAGAAGTACGAAATGGTTGAAAGCTCATTTAATAACAGACCATGGGCAAGTGGGGGCAGAAAAATGGGCTGAAATTGAAATCCAGTTACAACAAAGAGGAAAAGTATCGACAACGGCAAATTTAGAAGGAAATTCAaacttaaaaataccaaatgGAAGTCAAGATATGCAACAACAGAAAGTAGGTGGcgttcaaaattttatatccaCTTTATTTGGTATCGACGAGAGTAACTCGAAAATGTATCAATGTTCCTATTGCCCATTCACCTCGCCTTTATTGCCCTTGTTATTTGTTCACGAAAGATCACATATGAATATGGAAGGGTTTTCATTTAAGTGTCCTATATGCCCACAAAATTTTACTGAACGAAAATTGCTGGAACGTCATATATTATCTAGACATTCCTTCCTCTTACCCAATACTGTCAAAGAGGAAGATACTATCACAAAAGAAATGTCTAAAGAAAGTTCCGAGGACGATGATCCAAGTAGACAAGAATTTGGTACATCTAGTCAGGGACAACTAGCTAAGCTATCATCCCCTATAAAAGTACCCTCGGATATTGAGCAATCTTTAATGGATGTGGCTAAAAGAATGCAATGGCCAGCTACTTATGCTATACctcaaagaaaaaatcaatcaGAACAGGACCAAGATGAAGCATCTTCACCTTCAGGGCCAGGGTACGTAATGCAGGCATTTTTATTAGAAGAATCAGCCTCCGAACGTCGGGTTATGCCCTCTGTTGTTTTCTTACCTATGCTACAAAAACAACCAGCCCCTATCACTGTTACTTTTACACTAACCCCGGCCTAA
- Protein Sequence
- MTSVTLPSSSGTLNGGYSSSVTEKLPTTQPDFDALRTIKRSLCLTSTESCKKRRKQSTPIRISTSETESQNANSLEGKPIVPSPEPNHRCSICQQSFSYPEQLQNHIICEHPLLECKKEPEDHPTTPSSVSYVDQSETPMGLSIMRSDIPWVNEIQNKEWIGSNLSNLSFNPANPMFMTLPPYSHTDNISLKPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYTDSSSSEPLLNSVTVPSITSNLKISNPVPTTVEQPTITSDSKTPANMINAFNNIFQNPFSNQANLSENEMNENIAMSNGMSSSSESDKIFSDDPHVEENSSPCIQTESTSIKNDPDGLFHDTSSKLSSDQTNRELDLSYRLRKIGVMNPKAFCEICCKEYCNKYFLRTHKLKRHGIYIPDDKDKDIRSECMSGFSSSNVQTSPLNLIMTEQGSSDSKITSPTSIGCDICCIKFQNASLAQLHNVSVHARVSSIEPEECDRSQQDSTKISEGIKSNEKSVNPETISEDLQKLQTMILQLNDIDTAKVTTNCAICNKEFENRFYLQAHMLSEHSMLMDEGDCEKAGDTELRSTNNAMCDICGKELLNVEELSRHIVEFHSNHQVAADSSKDDNSGFTGGDKSSNRLQVSSGHIPERRVSMNVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIIEYGGNLLPPRKSDGESSVLPSPSTPLETDSTLKPTDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLITDHGQVGAEKWAEIEIQLQQRGKVSTTANLEGNSNLKIPNGSQDMQQQKVGGVQNFISTLFGIDESNSKMYQCSYCPFTSPLLPLLFVHERSHMNMEGFSFKCPICPQNFTERKLLERHILSRHSFLLPNTVKEEDTITKEMSKESSEDDDPSRQEFGTSSQGQLAKLSSPIKVPSDIEQSLMDVAKRMQWPATYAIPQRKNQSEQDQDEASSPSGPGYVMQAFLLEESASERRVMPSVVFLPMLQKQPAPITVTFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106716;
- 90% Identity
- -
- 80% Identity
- -