Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055257.1:25469163-25472051[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0091 0.83 10.7 0.4 1 21 190 210 190 211 0.93

2 14 0.11 9.9 7.3 0.2 2 21 279 298 278 299 0.94

3 14 4.9 4.5e+02 2.1 0.5 2 19 307 323 306 327 0.68

4 14 9.9 9.1e+02 1.2 2.1 2 19 347 364 346 366 0.79

5 14 0.11 9.9 7.3 0.1 1 23 383 404 383 404 0.94

6 14 0.00014 0.012 16.5 3.9 1 20 410 429 410 431 0.94

7 14 0.015 1.4 10.0 0.4 3 23 435 456 433 456 0.96

8 14 5e-07 4.6e-05 24.1 0.6 1 23 461 483 461 483 0.97

9 14 1.5e-05 0.0014 19.5 1.7 1 23 489 512 489 512 0.93

10 14 0.0044 0.4 11.7 0.9 1 20 567 586 567 587 0.95

11 14 0.011 1 10.4 6.8 1 23 597 619 597 619 0.98

12 14 0.011 1 10.4 5.7 1 23 625 647 625 647 0.98

13 14 7.1e-08 6.5e-06 26.8 0.3 1 23 653 675 653 675 0.98

14 14 0.0001 0.0095 16.8 1.7 1 23 681 703 681 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0091	0.83	10.7	0.4	1	21	190	210	190	211	0.93
2	14	0.11	9.9	7.3	0.2	2	21	279	298	278	299	0.94
3	14	4.9	4.5e+02	2.1	0.5	2	19	307	323	306	327	0.68
4	14	9.9	9.1e+02	1.2	2.1	2	19	347	364	346	366	0.79
5	14	0.11	9.9	7.3	0.1	1	23	383	404	383	404	0.94
6	14	0.00014	0.012	16.5	3.9	1	20	410	429	410	431	0.94
7	14	0.015	1.4	10.0	0.4	3	23	435	456	433	456	0.96
8	14	5e-07	4.6e-05	24.1	0.6	1	23	461	483	461	483	0.97
9	14	1.5e-05	0.0014	19.5	1.7	1	23	489	512	489	512	0.93
10	14	0.0044	0.4	11.7	0.9	1	20	567	586	567	587	0.95
11	14	0.011	1	10.4	6.8	1	23	597	619	597	619	0.98
12	14	0.011	1	10.4	5.7	1	23	625	647	625	647	0.98
13	14	7.1e-08	6.5e-06	26.8	0.3	1	23	653	675	653	675	0.98
14	14	0.0001	0.0095	16.8	1.7	1	23	681	703	681	703	0.97

Sequence Information

Coding Sequence: atgtttgagaaaattgaaatttttgatagcGATAATAAATGTATAGATGTTATTACAGAAggattgaataaaaaatgccGTACATGCATTAAAAATGATGGAGTTATCAATGTGTTTACGTCTAAACACAAGgaaatttcattaaatgaaatgtttGATATGTTTTCATTGGCGGCAgtaAATGTTTTCGATGGACTACCTCAAAAAATATGTGTAAAATGCGCAAAGACGCTCGTCGAATTTTACTCCTTCAAATTACAAACAGAAGAGGTGCAATTAATGCTGCAAATAGCTGTCGGGCAACTTTCTTTACCAAGTTTTCCAAAACTATTGGATACATCgacagaagaaaataactctCAACATAATAAAAgtgatgtaaataattttacaacATATAATTGCAATGAAGtagaagaaatggaaaatagagaagaaaaaatagaaataatttctgaTGATGATATCGTTGATATAGATACTAAAGATGACATTTTTACAAAAGTGGACCCATCGGGttctaatagaaaaaatagtagcgaaaataataaatattcaaatcaagTTTATACTTGTTCAGattgtcaactgtcatttaAAGAATATGAGGAGTACGTAAGTCATCGAATAAAAGTGatcgaaaaacaaaataaggaaAGAAACTTGAAAAACGAAGTCGTCGAGGAAAATGTCGAAGCAGTGGATAGTAAACTTGATATTCCTCCGACTGAGTTAACagtgaataaaatagaagattgTTTTCTAGAACATGATTATTCCAAACTTTCCATACCCCGAGATGATCTCCAATCGAATAAATCGAAGTTGAGATCCAAATGTGTTGTTTGCAATCTCGAATTCGAAACAACTGCCGATTACCTCAAACATAAACGCGAAAACTTCAGAAGACACTCGACACCGTGTACATTATGTAACAAAAGAATATCGacaaataaaattgaacaaCACCAACAACTCCACGCCAAAACAAAATGTCGAATGTCGACGATGTCGATCGATCCCGAAACCGGCGAATGCACTTGCAGCGTTTGCAAAGTGAAATTCGATTCCAGATTGAGATATTTGTTACACAAAAGATGTAAAACCAAGCGAGACACTTCAACAATAATGAAACCGAAAAAGAAACATCCCTGTCCGATATGCGGGGTGCAGTACGGCTCCTCCATACTCAACGATCACATCAACACCCACACGCAAGAACAACCTTACATGTGCGAAATTTGcggaaaaaaatttagattcaAATCGAATTTCCATTCCCACAAACACGTGCAATGTCTGTGCGATTTATGCGGCGCAATAATAAATTCACCGAACGGATTGAGGAAACACATCAAGATGAAACATTCGATCGCTTCGTACGCTTGTGATACGTGCGATAAGATGTTTAACAACAAGAGCCAATTGGAGGTTCACAGAAGGGCTCATACCGGGGAAAGACCCTATTTGTGTACGATTTGCGGTAAGATGTTTACCCAAATAACGCATTTGAAGACCCACACGAAAGGAGTACACAGTCGAGACAAACCCTTCTATTGCTCGAAATGTAAAAGATACGTAGACGGCGAGGAGCACAAGTGCAACGGGAAATTcgatttgtacaaaaaatgtgcAACTTGCAACGGTTTCGTTGTAGATATGGAAAAACACGTGGAGCTGCATCGCGACGGTTACGAATACATATGCGGTTTTTGTAATCAGACTTTTAGCGAAAAAGCGAAATTGAAATCCCACAAAACCGCTCGAGTATGTAGACGTAAATACGAATTTAGTTGCGATGTGTGCTGTAAACGATTTCATTCGAAATCTCTACTCAAAATCCACACTCGATCTCACACCGGCGAGAGACCGTACAAATGCGATACGTGCGGTAAACGGTTCCTTCAATTCGCTCATCTGCATTATCATTTGAAATTACATACGGGGGAGAAACATTACGAATGTCCTTATTGCGGTAAAAGATTCGTTTTGAACGGAAATCTCACTCAGCACATTAGATTGCATACGGGGGAAAAACCGCACGTTTGCGATTATTGCCTTAAAGGATTCCCCACATCTTCGTCTatgaaaaaacatcgattgatTCATTCGAAATATAAAACTTGA
Protein Sequence: MFEKIEIFDSDNKCIDVITEGLNKKCRTCIKNDGVINVFTSKHKEISLNEMFDMFSLAAVNVFDGLPQKICVKCAKTLVEFYSFKLQTEEVQLMLQIAVGQLSLPSFPKLLDTSTEENNSQHNKSDVNNFTTYNCNEVEEMENREEKIEIISDDDIVDIDTKDDIFTKVDPSGSNRKNSSENNKYSNQVYTCSDCQLSFKEYEEYVSHRIKVIEKQNKERNLKNEVVEENVEAVDSKLDIPPTELTVNKIEDCFLEHDYSKLSIPRDDLQSNKSKLRSKCVVCNLEFETTADYLKHKRENFRRHSTPCTLCNKRISTNKIEQHQQLHAKTKCRMSTMSIDPETGECTCSVCKVKFDSRLRYLLHKRCKTKRDTSTIMKPKKKHPCPICGVQYGSSILNDHINTHTQEQPYMCEICGKKFRFKSNFHSHKHVQCLCDLCGAIINSPNGLRKHIKMKHSIASYACDTCDKMFNNKSQLEVHRRAHTGERPYLCTICGKMFTQITHLKTHTKGVHSRDKPFYCSKCKRYVDGEEHKCNGKFDLYKKCATCNGFVVDMEKHVELHRDGYEYICGFCNQTFSEKAKLKSHKTARVCRRKYEFSCDVCCKRFHSKSLLKIHTRSHTGERPYKCDTCGKRFLQFAHLHYHLKLHTGEKHYECPYCGKRFVLNGNLTQHIRLHTGEKPHVCDYCLKGFPTSSSMKKHRLIHSKYKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -