Dcar009326.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055256.1:5066957-5079455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6e-06 0.00033 21.4 0.6 1 23 182 204 182 204 0.98 2 12 7.1e-05 0.0065 17.3 1.3 1 23 210 232 210 232 0.98 3 12 2.4e-05 0.0022 18.9 3.2 1 23 238 260 238 260 0.98 4 12 0.00014 0.013 16.4 1.4 3 23 274 294 272 294 0.95 5 12 1.6e-05 0.0014 19.4 0.2 2 23 301 322 300 322 0.97 6 12 2.5e-06 0.00022 22.0 0.9 1 23 328 350 328 350 0.98 7 12 6.8e-07 6.2e-05 23.7 0.5 1 23 356 378 356 378 0.99 8 12 3.5e-05 0.0032 18.3 0.7 1 23 384 406 384 406 0.97 9 12 2.2e-06 0.0002 22.1 2.2 1 23 412 434 412 434 0.98 10 12 2.4e-06 0.00022 22.0 0.9 1 23 440 462 440 462 0.98 11 12 4.6e-05 0.0042 17.9 4.1 2 23 469 490 468 490 0.93 12 12 1.1e-07 1e-05 26.2 1.9 1 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGGATATGAAAATGTACTTGACTTCTCCTCTGCAGGTAGACAAAATATGTCGAGCATGTTTATCAGAAAAAGGAGATATGAGGCCTTTATTCGGAGCATGTTTGGatgaaatgttaaattcatTTGCATCTATTAAGGTGGCTGAAAATGACGGATTCCCACATCTTATGTGTGTACAATGTGTACTGCAATGTAGTCGAGCCTATACTTTCAAACAACAATGTGAAAAATCTGATAATATTTTAAGGCAATACCTTTCTTCTGAATTTCAGcAACAACTGGCTGAGACAATTGCTGAAAAACACAGGCAACAAGCTAAACAAGAACTACAAGAGCAGTTGCAGTTTTCCGATGATATAGGTACTGTTATAATTGAACAAGAAATACCGGAGTTTGTTACATATACAGAAGGTCAATTAGATgTAAAGGATGGATTATATACCATTGAAGCAACCGCTGTTACAGAACCTGATACAGAAGGGCTTGGAGATGAAATTGTTTTACGACTTGAACCAAAACCAACAGGAgagaataaattcaaatattcatgtACAAAATGTGATCAAACTTTCGCCCTGAAAGTTGATCTtaaggTTCATATGATGTCCCATCCAAAAGATCTCGATTTTGAATGTCATATATGCCAAAAAGCTTTCAGCGAAGCGAGGATATTGAAACGCCATCTTAAAATTCATCTAGAACAGAAACCTCACCAATGTGATCAATGCGAAATGTCTTTTGCTGAGAGTTCTAATTTAACTAAACATAAGAAAAAACATACAGGTGAGTTGAGGAATATCAAGGGGAAACCACATTTGTGTTCCGTATGTGGCAGAGCGTTCAAATGGGCATCTAGTTTATCCAAACATATGAAATATCATACAGGACATAAATTACTTTCATGTGAATATTGTGGAAAGCAGTATGTTGAGgcAAGAAGCTTAAGAATTCACATTAGATCTCACACAGGGGAACGTCCTTATGTTTGTGAAGTTTGCGAAAAAGGATTTACTCAGATTTGTAATTTAGAAAAACACCTTCGAGTACACACTGGAGAAAAACCGTTCCAGTGCCCTGTTTGCAATAAAaggtttactCAATCAGGTTACGTTGGTATCCATATGCGTACACATACGGGAGCTCGTCCATATGTTTGCCGTACTTGTGGTAAAGCTTTCGCTGGTTCAAGTACCCTCAACATACACAAACACGTACATACTGGAGAAAAACCATATATCTGTCAAGTGTGCAATAAATCGTTTAGCCGACACGAAACGTTGATAATCCATACTAGATCACATACTGGAGAAAAACCACACGTGTGCCAAGTATGCAACAAAGGTTTTACCAGTTCGGGATTGTTATCTGGACATATGAGAACTCATACTGGTGAAAAACCACATGCTTGTGAATGTTGCGATAAAAAaTTTGCCAGTTCAAGTAGTTTAAAAGTGCATATGAGGTCTCATACCGGAGATAAGCCGTTCATATGTAAAATTTGTAACAAGAGTTATTCACAATCTAGTACCCTTCAACAGCATATGACCACACATAATCTTAAAACTGATCTAAAATTAGATACAGTTCATGTAACTTTACCAGActtaataacTGTCGACAATCAGACCATCCAAGTACAGGCTATCTCTTCAATGTAA
- Protein Sequence
- MDMKMYLTSPLQVDKICRACLSEKGDMRPLFGACLDEMLNSFASIKVAENDGFPHLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSSEFQQQLAETIAEKHRQQAKQELQEQLQFSDDIGTVIIEQEIPEFVTYTEGQLDVKDGLYTIEATAVTEPDTEGLGDEIVLRLEPKPTGENKFKYSCTKCDQTFALKVDLKVHMMSHPKDLDFECHICQKAFSEARILKRHLKIHLEQKPHQCDQCEMSFAESSNLTKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLRIHIRSHTGERPYVCEVCEKGFTQICNLEKHLRVHTGEKPFQCPVCNKRFTQSGYVGIHMRTHTGARPYVCRTCGKAFAGSSTLNIHKHVHTGEKPYICQVCNKSFSRHETLIIHTRSHTGEKPHVCQVCNKGFTSSGLLSGHMRTHTGEKPHACECCDKKFASSSSLKVHMRSHTGDKPFICKICNKSYSQSSTLQQHMTTHNLKTDLKLDTVHVTLPDLITVDNQTIQVQAISSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00912434;
- 90% Identity
- iTF_00912434;
- 80% Identity
- -