Dcar014678.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055258.1:32464090-32465367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.8e-06 0.00035 21.4 0.4 1 23 6 28 6 28 0.99 2 15 7.4e-05 0.0067 17.3 3.8 1 21 34 54 34 56 0.95 3 15 0.00011 0.01 16.8 1.3 1 23 62 84 62 84 0.98 4 15 1.5e-05 0.0014 19.5 3.5 1 23 90 112 90 112 0.99 5 15 9.9e-07 9.1e-05 23.2 0.9 1 23 118 140 118 140 0.98 6 15 0.00016 0.015 16.2 4.9 1 21 146 166 146 168 0.94 7 15 0.00012 0.011 16.7 3.8 1 23 174 196 174 196 0.96 8 15 1.8e-06 0.00017 22.4 0.9 1 23 202 224 202 224 0.98 9 15 0.00026 0.024 15.6 4.1 1 20 230 249 230 252 0.95 10 15 2.2e-05 0.002 18.9 2.3 1 23 258 280 258 280 0.96 11 15 4.7e-06 0.00043 21.1 0.3 1 23 286 308 286 308 0.95 12 15 0.008 0.73 10.9 6.4 1 23 314 336 314 336 0.98 13 15 1.5e-06 0.00013 22.7 0.6 1 23 342 364 342 364 0.99 14 15 9.3e-07 8.5e-05 23.3 0.6 1 23 369 391 369 391 0.97 15 15 2.3 2.1e+02 3.2 0.9 1 13 397 409 397 411 0.88
Sequence Information
- Coding Sequence
- ATGATCGAAACACCTTTCGaatgtgacatttgttcaaAATCTTATCCATACAGAGGATCGTTGATCTATCATTTACGTACACACACGGGGGAGAGACCGTTTAAATGCGACATCTGTTCGAAATCGTTTCCCGCCAACAGCACTTTACGAAAACACCAAAAATGTCACACGGACGAAAGACCGTTCAAATGTGACGTTTGTTCGGTAACCTTCAAAGCGAAATACTCCCTAAACAAACATTCGCAGATCCACACCGGATTAAAACCGTTTAAATGCGACATTTGTTCGAAATCTTTCGCCCACAAGCAATTATTCAATGGCCACTTGCGCAGGCATACAAGGATAAAATCTTTCAAATGTGATTACTGTTCAAAATCCTTTGCGCAAAAAGTGTCCTTGGTAAATCATTTACTTTCCCACACGGGGGAAAAACCGTTTAAATGCGACATCTGTTCGAAATCCTTCCCTTCTAATAACACTCTACaaaaacataagaaatgtcACACGGACGAAAGACCGTTCGAATGCGACGTTTGTTCGACAACATTCAAATTTAAATCGTCCCTGAATAAGCATTCGCACATTCACACTGGTAAAAAACCGTTTAATTGCGAAATTTGTTCGAAATCCTTCGCGTACAAGGAATCGTTGGTATACCATTTACGTACACACACGGGAGAGAGACCCTTCAAATGTGACATCTGTTCGAAAGCCTTTCCTTCCAACAAAACTTTACAGAAACATAAGACGTGTCACACGGACGAAAAATCGTTCAAATGTGACGTTTGTTCGAAAACGTTCAAGTTAAAATCGTCCCTCAACTCCCATTCGCAGCTCCACACCGGCGAACAAACTTTCGATTGTAAAATTTGTTCCGAATCAtttaacgacaaaaaaaatttgaaagcgCACGTCGGTGTCCATGCGGCAGAAAAACCGTTCAAATGTGACGAATGTCCAAAGTCGTTTTTATGCAAAAGCCATTTGAAATCGCATACGCGCCTCCATACACGGGAAAATTTGTACGAATGCGATATTTGTTCAAAATCGTATGCATACAAGGAATCCTTGATATATCATTTACGCACACACGAGAACAGAcctttcaaatgtcaaatttgccCGGAATCTTTTAGAACGATGTCTAACCTAAACAGTCATTTGGTTTCGCATAGcgaaaacaaaacatttaaatgCGACGTTTGCCTGCAAGATTTTTCAAAGAAACGCTCCCCGAGTAGCTATTTGCGCTTCCACATCTGTGGAAAAACTTATTAA
- Protein Sequence
- MIETPFECDICSKSYPYRGSLIYHLRTHTGERPFKCDICSKSFPANSTLRKHQKCHTDERPFKCDVCSVTFKAKYSLNKHSQIHTGLKPFKCDICSKSFAHKQLFNGHLRRHTRIKSFKCDYCSKSFAQKVSLVNHLLSHTGEKPFKCDICSKSFPSNNTLQKHKKCHTDERPFECDVCSTTFKFKSSLNKHSHIHTGKKPFNCEICSKSFAYKESLVYHLRTHTGERPFKCDICSKAFPSNKTLQKHKTCHTDEKSFKCDVCSKTFKLKSSLNSHSQLHTGEQTFDCKICSESFNDKKNLKAHVGVHAAEKPFKCDECPKSFLCKSHLKSHTRLHTRENLYECDICSKSYAYKESLIYHLRTHENRPFKCQICPESFRTMSNLNSHLVSHSENKTFKCDVCLQDFSKKRSPSSYLRFHICGKTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -