Dcar001170.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diorhabda carinata
Gene Symbol
Znf48
Assembly
GCA_029229535.1
Location
CM055252.1:26835035-26850026[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.8e-05 0.0062 17.4 1.6 1 23 95 117 95 117 0.98
2 22 0.0097 0.88 10.6 0.3 1 22 123 144 123 146 0.90
3 22 0.013 1.2 10.2 0.2 2 23 154 177 153 177 0.96
4 22 0.00066 0.06 14.3 0.1 2 23 184 205 183 205 0.97
5 22 0.00036 0.033 15.1 1.6 2 23 217 238 216 238 0.96
6 22 3.3e-06 0.0003 21.6 1.2 1 23 264 286 264 286 0.98
7 22 3.1e-06 0.00029 21.6 1.9 1 23 292 314 292 314 0.99
8 22 4.6e-05 0.0042 18.0 0.5 1 23 320 343 320 343 0.97
9 22 0.061 5.6 8.1 2.2 1 23 353 376 353 376 0.95
10 22 9e-06 0.00082 20.2 5.1 1 23 433 455 433 455 0.99
11 22 0.00013 0.012 16.5 5.9 1 23 461 484 461 484 0.98
12 22 0.9 82 4.4 0.3 2 23 490 511 489 511 0.95
13 22 0.027 2.5 9.2 4.4 2 23 579 601 578 601 0.95
14 22 4.8e-06 0.00044 21.0 3.3 1 23 609 631 609 631 0.98
15 22 9.3e-07 8.5e-05 23.3 4.3 1 23 637 659 637 659 0.98
16 22 0.067 6.1 8.0 3.0 1 23 665 688 665 688 0.95
17 22 0.27 24 6.1 1.7 3 21 850 868 848 869 0.92
18 22 6.6e-06 0.00061 20.6 2.8 1 23 941 963 941 963 0.98
19 22 6.7e-06 0.00061 20.6 0.9 1 23 969 991 969 991 0.99
20 22 6.1e-05 0.0056 17.6 0.6 1 23 998 1020 998 1020 0.98
21 22 0.039 3.5 8.7 0.3 1 20 1026 1045 1026 1047 0.90
22 22 0.014 1.3 10.2 0.5 2 23 1225 1247 1224 1247 0.95

Sequence Information

Coding Sequence
ATGCTAAcctcaaataatttaaattccaCTGTTACTGATACTTCTTTCTCAACTTACTTTGTTATTCCTTTAGACAATGTCTTCAAGACTTCTACTGGCATAGGACAAgaatctatttatttaattaataatgaaaaccAACAGCATTTGTTGGAAAATTCCGAAGTATGTAATAATGGCACTATTGGAGAACAAGAGGAAAGTCCATCAGTAATTAAAAGAACTGATGAACAAACTTTTGACAACTCTCTATTTCCTTTACCTCCCCTTCCCGAATCAAAATATACTTGTCCAAAATGTGAGAGAACATTTAAAACAATCAAAGAATATAAAGATCATTTAAAATGGCACAAATCACAGAAAACTTTTAAGTGTAATCAATGTTCAATGGGATATAATAATgaggttaatttgaaaatacacaATGAATTGGTTCACATTACAGGTAATAACTTGAAGAGTTGTCCAATTTGTGGTGTTAGCTTAAAATTTAAGAGAACTGCCGGCTTGAGATCACATTTGATGATACATCAAACTGAGGAAGTACAAACTTGTGAAGAATGTGATGCTGAATTTGAGAGAGAGGATGAATATGCACAACACATGACGACACATTCTACAACAAAGAAAAACGAACTGCCTTCTTTAACTTGTTCCCATTGTGAGCTACAATTTGAGACAAAAGACCAGCTCAGAATTCATATTTCTAACCACATCAAGGCATTGAGAGGTGTTAAGAAAaggaaaactagaaaaacaaattctaaaaaaaaggCATATAGTTCAGAATTTACTtgcaaaatttgtaataaaagttttataaaacgTTCACTTTTACTTAGGCATGAAATGATACATAGTGGTGAAAAACCCTTCAAGtgTACTATATGCGATCATTCTTTTATTCAAAAAGGAACACTGAGAGTGCATTTATTAACACATTCAGGACTCAAACCATTTTCGTGTACTTTGTGCCCagcaaaatttattcaaaaagGAAACCTCAGAGTTCACCTTCAAAAAACCCACACTGTACCATACGGATGCCAGAAAATGTTTAAATGCCCACATTGCGCttgcattttcaaaaaagttgcCTCCCTCAATGGTCACGTTACCAAAGTACATTTGAGACCTAACCAGAACGAAGAAAACATAATAAACAAcgtaatgaaaaatttaaaagatcTTGAAGAACACAACACTGACCATTACGTAACATTAACCGGTTCCTCAAATGGAGAAGTTGGTAAAAAGTATACagtacaattgaaaataataggaGATGTCAAATGGTATAGGTGCACTCATTGCACCAAGATGTGCAAAAAACCTTCAGATCTCATTAAGCATATTAGAGTGCACACcaaagaaaaaccatttcaGTGTAAAATATGCAACAAacgattttcaatgaaatgcaCACTTCTTTCTCATATGAATAAGAAACACCAGATGGGGAATTTGAAATGTGGCATATGTGAAAGTACTTTTCTAACAACACAGTCACTATTTGTTCACGTTAAgGAACACGCAAGAGAAAATTCAACTGTCCCTGAACGATTGGATATAGGACATGAAATGACACAAAATTCATCAAACGAAACTCAATCTAAAATTAATAGAGTGTTGAAACAACCACTGTTTCAAAATATCCatggtACAATAAAGCTTAAACCTTCAAGAACTAAAATTTTGTATACCGATAATAACACACCAGTACCAAGACTTTTGCAATGTACTATATGTCGTAcaaaatttaccaaaaactATGATCTCAACTGTCACATGAAAGAACGCCACGAAGGAGGAGCAGAGAGAAAATTTAAATGCAGTGTGTGTCAAAAGTCGTTTTCAACATCATATCGATTAAAGGAGCATATGAATTATCACAATAATATCAAGAATTACGCTTGCGAACAGTGTAATAAACGATTCTTCAATTCATCTCATTTAAGAAGGCATATGTTAACACATGGTAGTGTCAGATCGTACATGTGTCCTTATTGCTGCAAGAATTTTCAAACACTTTCACTTGCCAGGCGACATATTAAGTTCATACACAAAAAAGAGGTTTCAGCAGAGgtaGTAAAGAAGAAACGAGAAAAAGAAACTGAGAATATTTTTCCTACAGAAGCGAGtgtaataactaataataaacttaataatttAGATAACAATCAGCATTTAAGTCGACAAGAACAAATCGAAGATCCTTCTTATCCTACACAAGTTATAAATACGGATCCTGGAATAGAAAGTACTGATTTAAACACGGGTCTTCAGACTTTTTACGTTAGTTTAGAagattttcagttgataaataACGCTGTTGTTGATGTAAATTCCTTAAATGATATTGTACCAAACCACGAAAATGTTCAAGTTGTTTCACCATTAAAGGAAAATCCCTGTGTGATATATACACATCCAACAGAAAATTCGGATAAAACAACAGCGCCAACTATTTTCGACGGTAATACCATTTTTCCAGCGTCCACGGGTTTAAATGAAGTAAAAGCCGTTTTCGATGACGCTAGTATAATATGTATGAACTGCAATCAAGTTTATTCGAGTTTTACGTATTTCCAAAAACATACTTGTTCAGGTAATTTAAACCGAGATACCAACAAAACTGTTAATAcggataaaaataaagaaacacaAGAACGAAAAGAAGAAACgctaaaaaatgaaatacaaactACTAATAAatctttagaaaataatttatcacgTCAATCCCCGACAAATAAAACTGGATCTAGTAGAAAAGTAGTACAATCAAAACGCTTGACACCTCAAGGTACAGCTGGTAATTATTCCTGCGTATTTTGCGGAAAGTTATTCAAGAAACCGTCCGATTTGGAAAGGCATCATCGTACCcacacaggagaaaaaccatttaCATGTGATATTTGTAGTAAGACGTTTTCATTGAAAGCTACATTAAACGGTCATCTCAGAACTCACGATCCTAATCATAAACAGTTCAGTTGTGACATATGTGATAGTATGTATTCATCCAAAACCAGTTTGAAAGTACATATGACAATTCATACAGGTGCTATGCATTACAAATGTACAAATTGTAACATGGAGTTCAGGACATTGGGGGCTAAAAAATCCCACGAAGCAACCGGTAATTGTgcacttaataaaaaaaagagtagaactacaaaaaataaattggcaGAATTCGTGAAAAATACAACAAAGGAATTAGTTACTTCCAACAATAAAGAAGATATACAAAATGAGGTGAATAATGTGGTACCGGAATATGTCCCATTCGAAAACTTGAATTTGGTAATGGATGATAATAATTTAACAACCCAACCACAAACTTTGGATCTTCCTTCTCAAATAGTCAACTTGGATATACCGACGACAATTTTATCAACTATTCCAGAAAACCAGATAACCGTTGATCACTCCAATTTACTTCAACAACTTCAATTTACCGATATGGTATTAACTACTAACGAAACAGGCACAGTACCATCTCTTATTTTGGATGATGTTAGTTTTTTGCATTTGAATACACCTTCAAATAATCTTCAGATAATTTCATTACCGGAAAATGATGGATCCGGAGTTACTATAAGTATAGAAGAACCAAATAACGtTATGAAAACGGAGACCAAACCTAAAAGACCGAAACAGGCTGTAGAATGTGATATGTGCTTAAAGATGTTGGGATCTAAAGATAGTTTGAGGAGACACAAGAAAAATGTGCATggtgacaaaaagaaaaatacgtCTTCAAACTGTGATATTAAAGACAATTCTTTCTCTGTTCagcaatttaaaaatttaaattag
Protein Sequence
MLTSNNLNSTVTDTSFSTYFVIPLDNVFKTSTGIGQESIYLINNENQQHLLENSEVCNNGTIGEQEESPSVIKRTDEQTFDNSLFPLPPLPESKYTCPKCERTFKTIKEYKDHLKWHKSQKTFKCNQCSMGYNNEVNLKIHNELVHITGNNLKSCPICGVSLKFKRTAGLRSHLMIHQTEEVQTCEECDAEFEREDEYAQHMTTHSTTKKNELPSLTCSHCELQFETKDQLRIHISNHIKALRGVKKRKTRKTNSKKKAYSSEFTCKICNKSFIKRSLLLRHEMIHSGEKPFKCTICDHSFIQKGTLRVHLLTHSGLKPFSCTLCPAKFIQKGNLRVHLQKTHTVPYGCQKMFKCPHCACIFKKVASLNGHVTKVHLRPNQNEENIINNVMKNLKDLEEHNTDHYVTLTGSSNGEVGKKYTVQLKIIGDVKWYRCTHCTKMCKKPSDLIKHIRVHTKEKPFQCKICNKRFSMKCTLLSHMNKKHQMGNLKCGICESTFLTTQSLFVHVKEHARENSTVPERLDIGHEMTQNSSNETQSKINRVLKQPLFQNIHGTIKLKPSRTKILYTDNNTPVPRLLQCTICRTKFTKNYDLNCHMKERHEGGAERKFKCSVCQKSFSTSYRLKEHMNYHNNIKNYACEQCNKRFFNSSHLRRHMLTHGSVRSYMCPYCCKNFQTLSLARRHIKFIHKKEVSAEVVKKKREKETENIFPTEASVITNNKLNNLDNNQHLSRQEQIEDPSYPTQVINTDPGIESTDLNTGLQTFYVSLEDFQLINNAVVDVNSLNDIVPNHENVQVVSPLKENPCVIYTHPTENSDKTTAPTIFDGNTIFPASTGLNEVKAVFDDASIICMNCNQVYSSFTYFQKHTCSGNLNRDTNKTVNTDKNKETQERKEETLKNEIQTTNKSLENNLSRQSPTNKTGSSRKVVQSKRLTPQGTAGNYSCVFCGKLFKKPSDLERHHRTHTGEKPFTCDICSKTFSLKATLNGHLRTHDPNHKQFSCDICDSMYSSKTSLKVHMTIHTGAMHYKCTNCNMEFRTLGAKKSHEATGNCALNKKKSRTTKNKLAEFVKNTTKELVTSNNKEDIQNEVNNVVPEYVPFENLNLVMDDNNLTTQPQTLDLPSQIVNLDIPTTILSTIPENQITVDHSNLLQQLQFTDMVLTTNETGTVPSLILDDVSFLHLNTPSNNLQIISLPENDGSGVTISIEEPNNVMKTETKPKRPKQAVECDMCLKMLGSKDSLRRHKKNVHGDKKKNTSSNCDIKDNSFSVQQFKNLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-