Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055258.1:32030701-32033038[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 30 5.2 4.4 4 29 74 97 72 113 0.80

2 14 0.031 31 5.2 2.3 18 40 189 212 181 219 0.80

3 14 0.0016 1.6 9.3 0.4 11 41 234 261 229 263 0.91

4 14 0.0047 4.8 7.8 2.3 1 34 253 282 253 291 0.82

5 14 0.18 1.8e+02 2.7 2.4 13 38 292 318 284 322 0.85

6 14 0.00025 0.26 11.8 3.4 5 41 317 345 314 348 0.88

7 14 0.17 1.7e+02 2.8 0.5 17 40 352 372 346 378 0.77

8 14 0.3 3e+02 2.0 1.2 13 38 376 402 369 406 0.84

9 14 3.8e-05 0.039 14.5 2.1 5 39 401 427 399 431 0.88

10 14 0.059 60 4.3 0.9 17 41 436 457 428 460 0.81

11 14 1.3 1.4e+03 -0.1 2.1 15 40 462 484 456 487 0.81

12 14 0.00024 0.25 11.9 4.5 4 39 480 511 477 518 0.85

13 14 0.019 19 5.8 0.8 14 40 517 540 512 542 0.85

14 14 0.00023 0.24 11.9 3.5 2 41 534 569 533 570 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	30	5.2	4.4	4	29	74	97	72	113	0.80
2	14	0.031	31	5.2	2.3	18	40	189	212	181	219	0.80
3	14	0.0016	1.6	9.3	0.4	11	41	234	261	229	263	0.91
4	14	0.0047	4.8	7.8	2.3	1	34	253	282	253	291	0.82
5	14	0.18	1.8e+02	2.7	2.4	13	38	292	318	284	322	0.85
6	14	0.00025	0.26	11.8	3.4	5	41	317	345	314	348	0.88
7	14	0.17	1.7e+02	2.8	0.5	17	40	352	372	346	378	0.77
8	14	0.3	3e+02	2.0	1.2	13	38	376	402	369	406	0.84
9	14	3.8e-05	0.039	14.5	2.1	5	39	401	427	399	431	0.88
10	14	0.059	60	4.3	0.9	17	41	436	457	428	460	0.81
11	14	1.3	1.4e+03	-0.1	2.1	15	40	462	484	456	487	0.81
12	14	0.00024	0.25	11.9	4.5	4	39	480	511	477	518	0.85
13	14	0.019	19	5.8	0.8	14	40	517	540	512	542	0.85
14	14	0.00023	0.24	11.9	3.5	2	41	534	569	533	570	0.88

Sequence Information

Coding Sequence: ATGGATATCCtaaatattaaagaagaaatggATATTTACGAGGATTTTACATCCATTGTCGATGTTGGGAAAGAATTTATTGATGAAGTATCTACACTAACGATTCAAAATGTAATTGGAAAGGTGGATGGAATTCAACCAATAAAACATCTAATAAAAGATGAATTAGATacattggaaatatttaataaccaTGTGGATATAGGACTGTTAAGTAAATGGAAATATATCCAACCAAATGCTATGGGATTAATGATATGTAAATATTGTGGGAATTTATACACAAAACAAGTGGAATTTTTATGTCACTTTTCCACATGCCAttgtataaaaagaaataagattaaACATCCCCTTAAAAATTGTGTTTTGAGAAAGATTAATGTGAAAGATGAAATTGAAGTAGTTGAACATCAATTTAAACAAGACTTGCAGGACACCACAAACCAGTTGGATGTTACTGATAATTTAAACACAAATGCACACGAGGATTCAAAATCTTTTGTAGAGGAGGAAAGTCATCCAAATATACAGTTGAATACTTGCACGGGATCAAAACCATTTTATTGTGTTATTTGTTTGAGAACTTTTACACGTAGAAGTAATTTAAGCAGCCATTTTCGTATTCacatcaaagaaaaacgtttcAAATGTGATTCTAATGAAACtgttcataaaattaatttaaataagtatttgCCTATAAGAGAAAAgtcattcaaatgtgacatttgtttcaAACTGTTTCCAAATAGAAGTAATTTGAAGACACATATGCGTAGCCACACAAgggaaaaaccattcaaatgtgacgtTTGCTCGAAAATTTTCTCACGGAATGCTACTTTAATCTCACATTCACTTATTCACAcaggaaaaaagaaatttaaatgtGAATTATGCTTAGAAACATTCttaaacaaaattcaattgaCCACACATCTACATAATCACTTTGGAGAAAAGCCAtacaaatgtgacatttgtttgaaacaattttcacaaaaaagtaatttgaaGACACATATGCGTAGCCACACAGGAGAAAAACCGTTCAAATGTGAcgtttgtttaaaaactttttcacagaACGCTAGTTTAATCACACATTTACGTATacacacaggagaaaagccatttaaGTGTGACGTTTGCTCGGAAACTTTCTTACAGAAAATTCAGATGACCACACATCTACGTAATCACTTTGGGGACATGCCAtacaaatgtgatatttgtgaaaaaaagttttcgcgGAAAAACAATTTGAACAGACATTTGATTAtccatacaggagaaaagccattcaaatgtgacatttgtttgaaaacgtTTACACAAATGAGTAGTTTGAATACACATTTGCGTAGCCATACAGACGAAagaccattcaaatgtgacatttgtttgaattcATTTCGATATGCACATTATTTGAAGAGACATTTGCGTATTCATACAGAAAACGAAACttttaaatgtgatatttgcttgaaaacattttcaagaaaaactaatttgaatagACATTTGCTTAGTCATACAGAAGAAAAACCGtacaaatgtgacatttgtttgaattcATTTCGGTATGCAAATAATTTCAAGAGACATTTGCGCATTCATACAGAAGACGAAACttttaaatgtgatatttgtttgaaaacatttttaagcAAAACTAATTTGAATAGACATTTGCGTAGTCACGCAGAAGAAAAGCAGCGTGATTGa
Protein Sequence: MDILNIKEEMDIYEDFTSIVDVGKEFIDEVSTLTIQNVIGKVDGIQPIKHLIKDELDTLEIFNNHVDIGLLSKWKYIQPNAMGLMICKYCGNLYTKQVEFLCHFSTCHCIKRNKIKHPLKNCVLRKINVKDEIEVVEHQFKQDLQDTTNQLDVTDNLNTNAHEDSKSFVEEESHPNIQLNTCTGSKPFYCVICLRTFTRRSNLSSHFRIHIKEKRFKCDSNETVHKINLNKYLPIREKSFKCDICFKLFPNRSNLKTHMRSHTREKPFKCDVCSKIFSRNATLISHSLIHTGKKKFKCELCLETFLNKIQLTTHLHNHFGEKPYKCDICLKQFSQKSNLKTHMRSHTGEKPFKCDVCLKTFSQNASLITHLRIHTGEKPFKCDVCSETFLQKIQMTTHLRNHFGDMPYKCDICEKKFSRKNNLNRHLIIHTGEKPFKCDICLKTFTQMSSLNTHLRSHTDERPFKCDICLNSFRYAHYLKRHLRIHTENETFKCDICLKTFSRKTNLNRHLLSHTEEKPYKCDICLNSFRYANNFKRHLRIHTEDETFKCDICLKTFLSKTNLNRHLRSHAEEKQRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459151;
90% Identity: iTF_00459151;
80% Identity: iTF_00459151;