Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055252.1:42007898-42013848[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.3e-12 2.4e-09 37.6 0.6 1 44 6 49 6 49 0.97

2 11 4.2e-15 4.3e-12 46.3 4.6 3 44 98 139 96 139 0.97

3 11 1.8e-12 1.8e-09 38.0 2.4 1 43 178 220 178 221 0.97

4 11 1.2e-12 1.2e-09 38.5 4.2 1 44 279 322 279 322 0.97

5 11 3 3.1e+03 -1.2 1.2 16 27 450 461 434 471 0.76

6 11 7.6 7.7e+03 -2.5 0.9 18 23 487 492 481 497 0.81

7 11 0.02 20 5.8 1.6 14 29 512 527 503 538 0.74

8 11 0.52 5.3e+02 1.2 1.9 17 29 543 555 533 565 0.80

9 11 1 1.1e+03 0.3 1.6 18 39 579 596 560 608 0.74

10 11 6.8 6.9e+03 -2.3 0.7 18 26 606 614 602 628 0.70

11 11 0.17 1.7e+02 2.8 1.1 18 41 634 654 618 655 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.3e-12	2.4e-09	37.6	0.6	1	44	6	49	6	49	0.97
2	11	4.2e-15	4.3e-12	46.3	4.6	3	44	98	139	96	139	0.97
3	11	1.8e-12	1.8e-09	38.0	2.4	1	43	178	220	178	221	0.97
4	11	1.2e-12	1.2e-09	38.5	4.2	1	44	279	322	279	322	0.97
5	11	3	3.1e+03	-1.2	1.2	16	27	450	461	434	471	0.76
6	11	7.6	7.7e+03	-2.5	0.9	18	23	487	492	481	497	0.81
7	11	0.02	20	5.8	1.6	14	29	512	527	503	538	0.74
8	11	0.52	5.3e+02	1.2	1.9	17	29	543	555	533	565	0.80
9	11	1	1.1e+03	0.3	1.6	18	39	579	596	560	608	0.74
10	11	6.8	6.9e+03	-2.3	0.7	18	26	606	614	602	628	0.70
11	11	0.17	1.7e+02	2.8	1.1	18	41	634	654	618	655	0.86

Sequence Information

Coding Sequence: atgaataataAGAGATCTCAAATTTGGAATGTTTTTACCATAAAATCAGCGGAGGAATCTATAGCTACCTGTAATGTTTGcaatcaacaattctcatataagAGCACAACAAATGATTTGAAAAAGCATTTTCAGAGGAAACATCCAAATATATCAATAGAAAGTAGAATAGAAAAAGTTTTGATTAAAACTGATCCCAATAAAAGTGATACGGGTCTAGATTCAAGTAACAGTGATTACGAAAGTGAAGATCAagaatattttagtaaaaagcCCAGAAAGCATTCAATACTATggaaatattttactaaaagtAAACACGAAGAATATATAGCGAGttgtaatatttgtaaaaaaaaattaggcTATAAAACCACCACGACCAATCTCAGAAAACATCTAAATAACAAACATCCacatattgaaataaacttgAGGAGTATTCCTGATCAAAATCaggttttgaaattggaaattaaAAGTTCTACTACTGATAACAACTTGTATGGttcaaaaaaagttaaatactACTCAGCAATATGGAATTATTTTACTAGAAACAATCCATATGACTATATGGCAACTTGTAACATTTGCGGAAGAGAATTATGTTACAGAACTTCAATTACTAACCTCAAGAAACATATCAGTAATATGCACATCGATATCAAATTGCATATGGGAGAAGAACTATCACAAAACCAAGTATCTAAAAAATCAACTGATCAATACTCGAatcaaaataaggaaaataacTGTGTAGATGGTCACTTATATACTTGTGAGGATACAAAATCAAATCAGCCTACTATAAAAAGGGAGAGGAGGCATTATTCGAAACTTTGGAATCATTTTACAAGAAAGAAATCCAAGGCTTGTGTAGCATCATGTAATATTTGTGATAAAGAAATAGGATACAGAACCTCGACATCAAATCTGAAGAAGCATTTAATTAATATCCATCCAGGCATCGATTTTCAATTGGAGACTGAGATACCTCAAAACCaaataaatttaggTTCGGTTAAAACTTGTTTGATTTGCTTACAAAATAACAGAGAATTACCAAGAATATTCTTTCAAATTAGTAATAACGATAACGAAGAAAAAAGTTATGTAACAAAAATTGGGGAGATCCTAAACGAAGATATTGTTATAGATGAGTCTCACGTAATTTGTCAAAGTTGTATTGATGATATAGAGAAAGTTTATAGTTTTAAACAAAAGATATCGAGAGCTTTCGATTTTTGGACTAAATTAGAATCCGAAACCGAAACTGAACATTTCGATCAAGATAACAAAGCTGAAAATCACCATGATTCAAtcgaaatgaaaaacaatttgtgCAAATTTACTTGTGAAAAATGCCATCAAGATTTCGAGTCTGCAGTTCTAATGTTGAATCACACCTGTACCCATAAGGATCAAGACGAAGTTTTATCAACACAAAACGGTTACAATTGTAAATTTTGCGGCACATGTTTCCAAAAACAATGGAAGAGGGATAAACACATGAGATTgTGTCGGAATCCCGTGAAAAAATACGATTGTACCATATGCGGAAAAACGTACAAATCCGCTTTTTTACTTCGGGAACATACGACCGTCCATACGGGCGAACGCAATTACATGTGTCACTTATGCGGTAAAACGTTCCATAGAGCGTCCGTCAGACATAAACATTTACAAGCTCATAATCGTAAACCGGGCGAAAAGATCaaacaaaaaccgtttttaTGTTTCATTTGCGGTAAAACTTTTCCTACGAACGTAGCTTCGAGACACATGAGAGTACATTCGGGTATCAAAAGAAAAGAATGCCATATCTGTTACAAGAGGTTCGATCAACTAGCACATTTGAAGatACATCTTCGTACCCATTCCGGAGAAAGACCCTACGAATGCGAAATCTGCGAAAGAAGATTTTCTCTACCTTCTACTCTTCGAATACACATGCGTCGTCACGATCGGAgtgattattga
Protein Sequence: MNNKRSQIWNVFTIKSAEESIATCNVCNQQFSYKSTTNDLKKHFQRKHPNISIESRIEKVLIKTDPNKSDTGLDSSNSDYESEDQEYFSKKPRKHSILWKYFTKSKHEEYIASCNICKKKLGYKTTTTNLRKHLNNKHPHIEINLRSIPDQNQVLKLEIKSSTTDNNLYGSKKVKYYSAIWNYFTRNNPYDYMATCNICGRELCYRTSITNLKKHISNMHIDIKLHMGEELSQNQVSKKSTDQYSNQNKENNCVDGHLYTCEDTKSNQPTIKRERRHYSKLWNHFTRKKSKACVASCNICDKEIGYRTSTSNLKKHLINIHPGIDFQLETEIPQNQINLGSVKTCLICLQNNRELPRIFFQISNNDNEEKSYVTKIGEILNEDIVIDESHVICQSCIDDIEKVYSFKQKISRAFDFWTKLESETETEHFDQDNKAENHHDSIEMKNNLCKFTCEKCHQDFESAVLMLNHTCTHKDQDEVLSTQNGYNCKFCGTCFQKQWKRDKHMRLCRNPVKKYDCTICGKTYKSAFLLREHTTVHTGERNYMCHLCGKTFHRASVRHKHLQAHNRKPGEKIKQKPFLCFICGKTFPTNVASRHMRVHSGIKRKECHICYKRFDQLAHLKIHLRTHSGERPYECEICERRFSLPSTLRIHMRRHDRSDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459331;
90% Identity: iTF_00459331;
80% Identity: iTF_00459331;