Dcar003592.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055253.1:28411404-28411862[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 3.7e-05 23.8 0.0 1 40 17 57 17 62 0.90 2 2 5.8 1.7e+03 -0.7 0.0 33 44 126 137 126 141 0.64
Sequence Information
- Coding Sequence
- ATGccaacaaaatatattagaaaaggGACAGTGCAAAGGGGAAAATGGACTGAAGCCGACCTACTCCGGGCTGCAGAAGCAGTTAAAAACGGTGTGATGGGCTTGAGAGAAGCACGCCGCACTTTCAACAACATTCCTCCTCCAACACTTAGAAGGCGACTTAAAAATAATGACTTTATCAAAAGAACTCTTGGACCGCCTTGTGTCCTTGGCATCcagaatgaattaaaaattaggtTTCATATACAAAAGCTACAAAAACACGGATTTGCGCCAACTCGTGAAAATGTCAGAGCAATGGCGTTTCACCTGGCAGATCAGCTTAAAATTAAACACCCTTTTAATAGAGACAGTAAACTTGCTGGTTATGACTGGTTACATATGTTTTTACAACGACATCCAGACTTGAGTGTTAGAAAAGCTGAGGGTGTATCACTAGCCCGATGCAACGTACTTTAA
- Protein Sequence
- MPTKYIRKGTVQRGKWTEADLLRAAEAVKNGVMGLREARRTFNNIPPPTLRRRLKNNDFIKRTLGPPCVLGIQNELKIRFHIQKLQKHGFAPTRENVRAMAFHLADQLKIKHPFNRDSKLAGYDWLHMFLQRHPDLSVRKAEGVSLARCNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458829;
- 90% Identity
- iTF_00458818; iTF_00458829;
- 80% Identity
- -