Dcar011682.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055257.1:15921088-15921468[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-08 1.8e-05 24.9 0.0 2 39 19 57 18 61 0.86 2 2 5.8 1.7e+03 -0.7 0.0 5 19 95 109 93 109 0.83
Sequence Information
- Coding Sequence
- ATGccggaaaatcgaaaaaaacctCTTGGAACAAGAAATTATGCCAATTACAAACCAGAAGTGTTAGAGGAGTGCTTAGAGGCTATTGGGTCAGGTGACTTAACCCAAAGAGCTGCAGAAAAAAGGTATAATATACCTAGATCTACGATAAAGGACAAACTTAAAGGGACTCATACAAAAAATGTAGGACGTGCAAGAATCTTTAGTGATGAAGAGGAGCATGTTTTCGAACaacatttaattaaaatgtcAGACTATCGGTTCCCTGTAGTTGAAATGGATTTTCGTTATGCAGTCAAAAGCTATTTGGACAAAAAGGTGTCCACATTTTTCAGTTCAAAAATAATCTCCCTGGATATGATTGGACAAAAGCCTTCTTAA
- Protein Sequence
- MPENRKKPLGTRNYANYKPEVLEECLEAIGSGDLTQRAAEKRYNIPRSTIKDKLKGTHTKNVGRARIFSDEEEHVFEQHLIKMSDYRFPVVEMDFRYAVKSYLDKKVSTFFSSKIISLDMIGQKPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927522; iTF_01088151; iTF_01088137; iTF_01088253;
- 90% Identity
- iTF_01088253;
- 80% Identity
- -