Dcar009611.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055256.1:12506572-12507969[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-09 2e-06 27.9 0.0 2 37 11 46 10 53 0.91
Sequence Information
- Coding Sequence
- ATGGCATCCAAAAAAAGACAACAGTGGGACGAGCATGATATGCGAGAGGCTATTGAGAACGTACAAGATCACAGTATGGGCTTTAAGTTGGCTGCAAAGACCTTCAATGTTCCCAAAACAACTTTGCGAAGGCGTTTGGCTAAACAGGACAGTTCCAAGGGTAATTTGGGAGGACGAACCGCAATTTTCTCTAAAGCCATCGAAGAGGAGATTGCAGGATATATTATTGATATGGAAACACGTTTTTTTCGTTTAACCTCTAAAGATTTGCGGCGGATGGTATTCGAAGTAgccgaaaaaaataaaatacagcATCGTTTCAATCGTGAAACAAAAATGGCAGGTTGGAAAAGGGTGAGGGGATTCCTGAAGCGCAATCCACGAATTTATTTGCGTAGTCCAGAAAGTACATCATTAGCTAGAGCCCAGGCTTTTAACAAGCCTAATATTCAAGCCTATTTCAATGCACTATCTAACACTCTGGAGCAGTACAACTTTCCTcccgaaaatatatttaatatgcaTGAGTCAGGTTTGACTACGGTCcaaaagaaatgtcaaaaaatttacGCTTCAAAAGGTCGGAAGCAAGTTGGTGCACTCAGCAGTGCAGAGCGTGGGCAGCACGTGACCGTAGTGTGCGCAATGAATGTCATGGGCACTTACATCCCTCCTGCTCTTATTTACCCTCGTCAAAGGATGAACGATGAGCTTATGAACGGTGCTCCCGTTGGTAGCATAGCTTTCGTACAAGAAAAAGGTTGGATGACCAgtgaaattttttgtagatGGCTAAAGCATTTCGTGAAGTATACGAAAGCATCTAATAACAATAAGGTTCTTTTGCTCCTAGATGGGCACAGTAGCCATAAGAGTCTCGAATCTCTTCAGTTTGCAAAAGAAAATGGGGTAATTGTGTTCTGCTTCCCGGCACATTGTTCACATCACGTTCAACCATTGGACGTAGGATTCTTCCGTCCTCTTCATACgtattttgatcaagaaattcAATTATGGCTTCGTCAAAACCCGGGGAAGGCAGTGACTCAATTCAAAATAGCAGGTCTTCTCAATCAAGCTTATTTGAAGAGTGCTGTACCATCAAATGCAATAAATTCGTTCGAACAGACTGGGATTCATCCTTTCAATCCTCATGTCTTCGAGGACTGGCAGTTTGCACCAGCTTTGGCAACGGATGAGCAGATTCCCGAGGCTCAAGGAGATATCATCGAGAACCAAATGGAATTAGAAATTCAAACCCCATCCACATCTGGTCTTAACATGTCTTCATCGTCAGTTCTCGACATTTCTGTGAAGGAAATTTGTCCTCCCCCTCAAACTGTAGCAATTGgtactgataaaaaaaatgcagAAGAAGGGGAAAAACTGGTCATTTGA
- Protein Sequence
- MASKKRQQWDEHDMREAIENVQDHSMGFKLAAKTFNVPKTTLRRRLAKQDSSKGNLGGRTAIFSKAIEEEIAGYIIDMETRFFRLTSKDLRRMVFEVAEKNKIQHRFNRETKMAGWKRVRGFLKRNPRIYLRSPESTSLARAQAFNKPNIQAYFNALSNTLEQYNFPPENIFNMHESGLTTVQKKCQKIYASKGRKQVGALSSAERGQHVTVVCAMNVMGTYIPPALIYPRQRMNDELMNGAPVGSIAFVQEKGWMTSEIFCRWLKHFVKYTKASNNNKVLLLLDGHSSHKSLESLQFAKENGVIVFCFPAHCSHHVQPLDVGFFRPLHTYFDQEIQLWLRQNPGKAVTQFKIAGLLNQAYLKSAVPSNAINSFEQTGIHPFNPHVFEDWQFAPALATDEQIPEAQGDIIENQMELEIQTPSTSGLNMSSSSVLDISVKEICPPPQTVAIGTDKKNAEEGEKLVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00739880; iTF_00458836; iTF_01238837; iTF_01243289; iTF_00739878; iTF_00458824; iTF_00458831; iTF_00458834; iTF_00458835; iTF_00458845;
- 90% Identity
- iTF_00739880; iTF_00458836; iTF_00739878; iTF_00458824; iTF_00458835; iTF_00458845;
- 80% Identity
- -