Dcar011263.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055257.1:8906920-8907345[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-09 2.7e-06 27.5 0.0 11 39 25 53 17 57 0.86 2 2 8.4 2.5e+03 -1.2 0.0 14 22 129 137 123 137 0.78
Sequence Information
- Coding Sequence
- ATGCCAAGAAATCGTCAAAGGACCACCGCTGAAGCGACTTGGACCGTAGAAGGCCTTCTATCTGCTAAAACTGCGATCAAGAATGGTATGTCTAAAAGGAAAGCCGTGAAACTATATAACATTCCATTTTCTACCTTGAGAGATcgactaaaaaatgaaaacaagaaCAACACAAGACTTGGTCGCAAGCCCGTTTTCACCCAACAGCaagaaaatgaaatagctgaACAGGCCAAGTTGCTGGCTTCGCTATACTATGGACTTAATGTCGCAGATTTGCGTAAACTTGCTTATAAATATGCAGAGTTCAACAATATCAATAACAATTTTGATCAAAGCAGCAAAACAGCTGGATTGGATTGGGTTCACGCTTTTATGAGACGCAATTCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTAA
- Protein Sequence
- MPRNRQRTTAEATWTVEGLLSAKTAIKNGMSKRKAVKLYNIPFSTLRDRLKNENKNNTRLGRKPVFTQQQENEIAEQAKLLASLYYGLNVADLRKLAYKYAEFNNINNNFDQSSKTAGLDWVHAFMRRNSSVSIRKAEATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146329;
- 90% Identity
- -
- 80% Identity
- -