Dcar002446.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055253.1:3399381-3410236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-09 1.2e-06 28.6 0.0 7 38 226 256 224 262 0.91
Sequence Information
- Coding Sequence
- atgcGTATAATAATCGTTATTAAAATTAGTCTTCgtttattttcagttatttcttATTGGTGTTATAAATGTGGCAAAGTATACAAAACGAAAGGGTCTCTGAGAAGACACCAGCGTTTCGAATGCGACAACAGACGGGCCTTTTCCTGTCCCATACCAGGATCTTCAGCCAATTTCGGACCGCAACCTTGCCCGCAATGTAacaaagtatttaaaaataaatggtCATTGAAAACCCATCTGAAACTTCAATGTGGCGTCGAGGCAAAACACGGATGTTACGTATGTTTAAAGAAGTTCAAACGCGCCGATAATTTGAAGAGACACATGGTACGCGTTCATAGAGTACAACTCACCATCGCTAAATTGTTATCTAAAGAAAAAGATAGATGTGGATCAGATCGAGATGATGATAATCAAACTTCTAATATGAATACCTTTAATGAAGAAAAAATCGCATCGAATGAAGACGTAAAAGAAATATTCGAAggagaagaacaaaaaattcGATGTCCAAATTGTACGAAAgtttacaaaaacataaatacTTTCAGAAGGCATTTTAGATACGAATGTGGTAAAGTCCCGCAGTTCGCTTGCCTGTATTGTCCAAAAGCGTATACTCAGAAAAGGCATTTCTTGGTGGCTCCGCGAAGAGACCTCAGACTGATTTACGAAGCGGTAGATGCTGTTAACAAAGGTCTATCCTTGAGAAAAGCTTCTGTTCTGTATAATATACCGCTAACATCTTTATTCAGATAtgttaaaatatacaaataccaATTGATTAATGCCCAGGGATATACTTGTCTAAGGTGCTACAAAACTTACCGATGGAAAAGGGGATTGAATCAACACCAACGATATTTCTGTGGTGTTGATCCTCAATTTGAGTGTCAATATAGGGGGTACCAGAATGAGATAGAAACATTTGAACGTGTTGCTTCGAATGCTGCTTCTAGATATGGAGGTGATAAAGCATGGAATAAGCTTTATTCTAAACCACGATACTCGCAAGAAAATGGTGGTACTGAACCAGATGACCCTCAAGATCTACAAGAAAGTAATGATCAGGATAAAAAAGAAGCTCCACATTTAGACGATTGGGTAAATTGCGACGTTCCGGATATCAGATTCGTTCTGATGAAGAAATTGTGCAGCATATAA
- Protein Sequence
- MRIIIVIKISLRLFSVISYWCYKCGKVYKTKGSLRRHQRFECDNRRAFSCPIPGSSANFGPQPCPQCNKVFKNKWSLKTHLKLQCGVEAKHGCYVCLKKFKRADNLKRHMVRVHRVQLTIAKLLSKEKDRCGSDRDDDNQTSNMNTFNEEKIASNEDVKEIFEGEEQKIRCPNCTKVYKNINTFRRHFRYECGKVPQFACLYCPKAYTQKRHFLVAPRRDLRLIYEAVDAVNKGLSLRKASVLYNIPLTSLFRYVKIYKYQLINAQGYTCLRCYKTYRWKRGLNQHQRYFCGVDPQFECQYRGYQNEIETFERVASNAASRYGGDKAWNKLYSKPRYSQENGGTEPDDPQDLQESNDQDKKEAPHLDDWVNCDVPDIRFVLMKKLCSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459289;
- 90% Identity
- iTF_00459289;
- 80% Identity
- iTF_00459289;