Dcar008416.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055255.1:27637998-27639773[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 4.5e-08 33.2 0.1 1 39 15 53 15 56 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGTAAATATATACGTAAAACTCAGCAACAATCTTGGTCGGAAGACAGTATGATAGCAGCTATACAGGATGTCAGAAATAATATACTTAGTGCAAAAAAGGCAGCAAGTCAGTACCAAGTCCCTTTGACAACACTTCGAAGACGAGTCAAATCGAACAAGGACCCTGAACCAGCTTCAAGAAAATATCTAGGGCGATTTAGACCTGTTTTTTCGGCAAAGCAAGAAAAGGAACTTGCGGATTTCATCATAGAAATGGAAAGTAGGCTTTTTGGCCTCGGCACGCGGGAACTGAGACACCTTGCATTCCAGTTtgcagaaaaaaataagattgcTCATAATTTTAATGCCATCAAAGGTCTTGCAGGGCGTGATTGGATTTATGGATTTTTaaccagaaacaaaaatatttctctaaGACTGCCAGAATATACGTCAGCTGCTAGGGCCTcgtctttcaataaatttaatgtaaGTTCATTCTTTAAACTTCTGAAAGAAATGTTCGAGAAACATAAATATCCACCCAGCAGAATTTTTAATTGCGACGAAACAGGTGTGTCTACGGTACCAAATAGGCCCTCCAGAATATTCTCCAGTAAAGGAAAAAAACAGGTGGGTTGTGTTAGTTCCGAGGAAAGAGGCACCTTAACTACTGCAGAAATTTGTTTCAATGCCGTTGGATTCTATATTCCTCCACTAGTAATTTTCCCGCGAATAAGAAAATGCCCAGCCCTTGAGCACGGGCTTCCCCCGGAATCGATCGTCGAATATCACCCGAGTGGGTGGATGCAGAGTGAGATTTTTTCTGATGTTTGGTTTAATCACTTCCTAAAATATACCAAACCCACCGAGACTGACCCGGTGTTACTGATTCTTGATGGCCATGCAACGCACACTAAGAATTTAAGGTTAGTTGAAAAGGCAAGGGCAAATTATGTAAACATAATTGTAATACCTCCACATACATCCCACCGGCTACAGCCATTAGATGTTGCCTTCATGTTTCCGCTCAATACGTACTATGAACAAGAAACGAAGAAATGGTTACTGAATAATCCTGAGAAGGTGATAACATTATATCAAGTCGGAGAACTGTTTGGTAACGCATTTAAACGGGCCGCAACTGCACAAAATGCTATTAATGGCTTCAAAGCCACTGGAATTTATCCATATAATCCGGATGTATTTCCAGAGGAACTATTCAAACCGGCAGAGACTACTGACAGACTACCAGAGGATGAGCGTCCAAACACTCCGCAATCAGTTCTACTTGAGAAtagatttaatgaaataaatcagTTTCCACAACCAGGGCCCTCTAGAGTTAGATCCCCGTCTCCTATAGTCTATtcaatactaaaaaaaatcacaCCCAAAGTGAGTGATGTAGGAGCTcccaaaagaaaattaaaaagggGGAAAACCATGGTGCTAACATCAACCCCTAATTACGAAGAGTTAAAAGTtgcaaaagaaattaaaatatcaaaaggcAAAAAAGAAgcggttaaaaaaatattggtaaaaACCAAGAAAACAAAGATACAAAAGGGAACAAACACGGATGAAGATACGTCGTCAGACAGTTCAATTCTGGTTGAGTTGGTAAATTCAAGTGATACAGATAGCGATCTAGAATTTTATCCTAAGACAAAGGATTTCGATATTGAAGAGGTTGACATCAAAAACCTAAATAGTGATGAATTTATATTAACAGAATTAACATCtgacaaattgacaaaaaaaaaagtttcttgcCCAAATAGTTAG
- Protein Sequence
- MVRKYIRKTQQQSWSEDSMIAAIQDVRNNILSAKKAASQYQVPLTTLRRRVKSNKDPEPASRKYLGRFRPVFSAKQEKELADFIIEMESRLFGLGTRELRHLAFQFAEKNKIAHNFNAIKGLAGRDWIYGFLTRNKNISLRLPEYTSAARASSFNKFNVSSFFKLLKEMFEKHKYPPSRIFNCDETGVSTVPNRPSRIFSSKGKKQVGCVSSEERGTLTTAEICFNAVGFYIPPLVIFPRIRKCPALEHGLPPESIVEYHPSGWMQSEIFSDVWFNHFLKYTKPTETDPVLLILDGHATHTKNLRLVEKARANYVNIIVIPPHTSHRLQPLDVAFMFPLNTYYEQETKKWLLNNPEKVITLYQVGELFGNAFKRAATAQNAINGFKATGIYPYNPDVFPEELFKPAETTDRLPEDERPNTPQSVLLENRFNEINQFPQPGPSRVRSPSPIVYSILKKITPKVSDVGAPKRKLKRGKTMVLTSTPNYEELKVAKEIKISKGKKEAVKKILVKTKKTKIQKGTNTDEDTSSDSSILVELVNSSDTDSDLEFYPKTKDFDIEEVDIKNLNSDEFILTELTSDKLTKKKVSCPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458837;
- 90% Identity
- iTF_00458837;
- 80% Identity
- -