Dcar006829.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055254.1:37363067-37363837[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-11 1.2e-08 35.0 0.0 4 37 5 38 4 46 0.93
Sequence Information
- Coding Sequence
- ATGGAcggaaaaaatatgaagaaggCGGTGGAGGAtgtaataaataagaaaatgggAGTAAATGAAGCGAATCgtttatatgaaataccttCGCGCACATTGCGAAGACACATCCTCAAGGGTTGGAGGTCTAAGCAGAGAATTGGAAGACCTTCTGAATTGGGATATGAGAACGAACTAAAACTTGTAGCTCACATTAAAAAGCTTAAATCCATCGGATTTCCCTTGGAGCCATCGAGACTGCAGTCTATAGCTTACGACTTTGCTGAAAATCTTCGATTGCCACATCGATTCAATAATGAGAAGAAGTCAGCAGGCTGGGATTGGTTTCAAGGATTTATGAAGCGTCATCCAGACCTGAGTAAACGTAAAGCAGAAGGCCTGTCATTGGCAAGATCTAGTGGTATGAATAGACAGGATgtcgataaatattttgaaatgttgttGAAGGTATTGACTGATAACGATTTGATTAGTAAACCAGAAAGAATCTACAACATGGACGAAAGCGGAATACAAGTTAACTATAAAACTGGACGCGTAATTGCTAGCAAGGGTGCGAAATGTGTAAATACTGTAACCAGTACCGAAAAAGGTGAAAATATATCTTTGATTGCGTGGTGCAATGCGGAAGGTACTTTCCTTCCGCCTATTTTGATACTGAAGGGTAAATACAAAAAACCGGAATTTTGTGAGGGTCTACCACCTGGCTCAAATGTATACATGAATCAGAAATCATCTTACATCAACGCTGAACTATTTTTGAAGTAG
- Protein Sequence
- MDGKNMKKAVEDVINKKMGVNEANRLYEIPSRTLRRHILKGWRSKQRIGRPSELGYENELKLVAHIKKLKSIGFPLEPSRLQSIAYDFAENLRLPHRFNNEKKSAGWDWFQGFMKRHPDLSKRKAEGLSLARSSGMNRQDVDKYFEMLLKVLTDNDLISKPERIYNMDESGIQVNYKTGRVIASKGAKCVNTVTSTEKGENISLIAWCNAEGTFLPPILILKGKYKKPEFCEGLPPGSNVYMNQKSSYINAELFLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458788; iTF_00458793; iTF_01076333; iTF_00458839;
- 90% Identity
- iTF_01076333;
- 80% Identity
- -