Basic Information

Insect: Diorhabda carinata
Gene Symbol: Tph2_1
Assembly: GCA_029229535.1
Location: CM055252.1:12135159-12153629[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-11 3.9e-09 36.6 0.1 1 39 333 372 333 376 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-11	3.9e-09	36.6	0.1	1	39	333	372	333	376	0.94

Sequence Information

Coding Sequence: atGAGTTCGGGAAAACCACTACTTGGTTTGTGGTTATACAGAAGCGGGGAAGATTGGAATTATAAGGAAGATAGCCCCATCGCCTTACAAACAcagACCCGTCAAAGTGGCGGAGAGGATGCAAAaccagaaacaaaagaaaaagtttccataattttcagtttaaaaaatCAAGTTGGTGGTTTGGTTAGAGCTCTTCAATCTTTTCAAGATTTGGGCATAAATGTTCAAAGAATAGAATCAAGACCTTCTCAAACAGATGAGAATCAAGCGGATTTCATGGTTGATATAGAAtgtgaaccaaaaaaattggaacAAttGGGTAGATTATTGAAACGAGAAGTGCTGACAATGGTAATCGGAAAATACGGCAGCGAGGAAAGTGAAAATGACTTTCCTCCACCGACTCCTCTTTCAGCGACGGCCAGTTTTGATTTCGATGACATGCCCTGGTTTCCGAAAAATATTTCCGAGCTGGACAATGCGCAAAATGTTCTTATGTACGGGAGTGAATTGGATGCTGATCATCCCGGATTTAAAGATCCAGTATATCGAAAAAGAagagattatttttataaaatagcaATGAACTATAAACAcGGCGAAAGCATACCCAGGGTCAAATACACACCAGAGGAAATTAAAACATGGGGAACGGTTTTTCGCGAacttaaaattttatacgaaaaacACGCATGCAGGGAATATCTCGAAAATTGGCCACAGTTGGTGAAATATTGCGGTTATAGAGAAGATAATATACCGCAATTACAAGACGTTAacgtatttttaaaaagaaaaactggtTTTTCACTACGTCCCGTTGGTGGGTATTTGAGCGCTCGAGACTTTTTAGCCGGACTAGCTTTCAGGGTTTTTCATTGTACGCAATATATAAGACACTCCACAGATCCATTTTATACCCCAGAACCGTTGTTCAATGTTTTATACAATATGGCTAGTAATTATCAACAGAAAACAAACCGCCAGTCTTGGTCGGAGGAGAGCATGCATCTTGCAATTCAAGAGGTGATAAATGGAAATATGGGCTATTTTAAAGCTTCAAAGGCATATTCAGTACCCCAGACTACATTGGAGATTCGTGTTAAGAAAGCGAAATCAGGTGCAACTATTTCCGATGCAAGCAAGAAAGGTTCATTAGGAAATTGTAAACCAGTGTTTAACTTAGGACAGGAAAAGGAACTTGTAGAGTATGCTCTTCTAATGGAAAATAGGTTTTTCGGAGTAACGTTAAGGGAACTACGAAGTCTTGCATTTGAACTTGCAAAGCGGAACGACCTACCCCACAATTTCAATAAAGGCAAACAGATGGCTGGAAAGCTGTTGGCTGTactcatttcttatatatctatatctatatcagAAGCCAAATCTCGTGCTCGAGCGATGGGTTTTAATAGACCAGTGGTGAACAATTTCTTTGATTTACTAGAAAGATTATTCGCCAAATACCAGTTTTCACCAGATAGAATCTACAATGTGGATGAAACTAGTGTTCTAAAGGAGCAATCGAAAGTTCTCGCCCTGCGAGGTAAACGTCAGAAAGTGGATGCAACTGAACTCTGGAAGGGTCATAACTATCAGACAGGAAAATCAGGAAAACTTTTCGGCACTGCTTTCAAGAAAGCGGCAGTTATGGAGACTGCAGTTAATGGATTCAGAAAGACAGGGATTTTCCCTATGGATCGTAGTGTGTTTAAAGACTGGATGTTTCAACCTGCTAAAACTAATGACACGATAGAAAATGAAGATTCGGGTGCTGTTCCACTTCCCATTATTCAAAAGGAAACAGTTGAAATTGCAGGACCATCAAATTCCGATATGACTATAGAAAAACCAGATTTGTCTAGCACTTCACGTTCGGATAAAAATCTTTCTAACCCAAGCTCATCATCTGAACAGGCTACTGTAGCTGCATTTGCAATTTCTCCTAAAGATATTTGA
Protein Sequence: MSSGKPLLGLWLYRSGEDWNYKEDSPIALQTQTRQSGGEDAKPETKEKVSIIFSLKNQVGGLVRALQSFQDLGINVQRIESRPSQTDENQADFMVDIECEPKKLEQLGRLLKREVLTMVIGKYGSEESENDFPPPTPLSATASFDFDDMPWFPKNISELDNAQNVLMYGSELDADHPGFKDPVYRKRRDYFYKIAMNYKHGESIPRVKYTPEEIKTWGTVFRELKILYEKHACREYLENWPQLVKYCGYREDNIPQLQDVNVFLKRKTGFSLRPVGGYLSARDFLAGLAFRVFHCTQYIRHSTDPFYTPEPLFNVLYNMASNYQQKTNRQSWSEESMHLAIQEVINGNMGYFKASKAYSVPQTTLEIRVKKAKSGATISDASKKGSLGNCKPVFNLGQEKELVEYALLMENRFFGVTLRELRSLAFELAKRNDLPHNFNKGKQMAGKLLAVLISYISISISEAKSRARAMGFNRPVVNNFFDLLERLFAKYQFSPDRIYNVDETSVLKEQSKVLALRGKRQKVDATELWKGHNYQTGKSGKLFGTAFKKAAVMETAVNGFRKTGIFPMDRSVFKDWMFQPAKTNDTIENEDSGAVPLPIIQKETVEIAGPSNSDMTIEKPDLSSTSRSDKNLSNPSSSSEQATVAAFAISPKDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -