Dcar015876.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055259.1:21593080-21595536[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-12 2.2e-09 37.4 0.0 2 45 31 73 30 73 0.92
Sequence Information
- Coding Sequence
- ATGATGTATGAATTTATCCAGATATATTTCGGAGCAACAGGAACAGTCAGGGAAAACAGAACTATGaaatATGACAAAGCAGAGTGGCTGGAGGAAAATCTTAAAGAAGCGTTGGAAGCCATAAATAATGGATTAAGTATCACCAAAGCTTCGCAAATGTTTAATATTCCTCGAACATCTTTGGGGCTACAtcacagaaaaaataatgaaaggaaACGTCTTGGCAGGCGTAGTATTTTAACAGAAGAGCAAGAGAATGATTTAGTAAATAGAGTTCATCGGCTGGTAGAAAATGGGCTGCCATCAACGCCTAATATAGTGAGAAGAAGTGTATTTTCTTACGCCACGGCGCGTAATATTCCTAATCCATTTTCACTGACATCACAACTAGCAGGCAGAAAATGGCTCAAGTTATTTTTCAAGAGACATCCTGAAGTTGTTAAACGTAAGGCACAGCAAATGAACCCGGCTAGGGCTCACCTGGAAAGTGATTCATCATCAGACTCAGAAGCTTCCCTTCATGATGACTCCTACACAGAAAGTGACAACGAACCACTAATCAAATTCATTTCTGCTTCTACAGGGGACATTACGGAGGAAGAAGTACCTTGTGATGATTCGGATATGTCGTTCAAAGACATGGGTTTTTTAGTTACTCCTGAAATAATAGTTACAAAGAAAGCCTGA
- Protein Sequence
- MMYEFIQIYFGATGTVRENRTMKYDKAEWLEENLKEALEAINNGLSITKASQMFNIPRTSLGLHHRKNNERKRLGRRSILTEEQENDLVNRVHRLVENGLPSTPNIVRRSVFSYATARNIPNPFSLTSQLAGRKWLKLFFKRHPEVVKRKAQQMNPARAHLESDSSSDSEASLHDDSYTESDNEPLIKFISASTGDITEEEVPCDDSDMSFKDMGFLVTPEIIVTKKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -