Dcar011874.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diorhabda carinata
Gene Symbol
RTase
Assembly
GCA_029229535.1
Location
CM055257.1:16829964-16841198[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.3e-12 9.8e-10 38.5 0.0 1 37 659 695 659 703 0.92

Sequence Information

Coding Sequence
atgtttggGAGTTGGCAAGTACTGGACCAAGAAACATTGTCTGATCACAATTACATCTTCTTTGAGATACCGTCTTTAGAAACACAAAAAGTAGctcctgaaaaaattattaaaggatggaaaatagaagaaaagaaaatccaaTACTTCATATctgagataaaacaaaaaatacgagAAGAAACAGACACCCTAAACCCTCAAGGTCTCATGGCGGCTATTAAAAAGGCTTGTCAACGCACATTTCAGCCCACATACAACTATAGTGGAACGAGAAAACCAGTATACTGGTGGTCATCACAGATCAGTGAGGCCAGAAAAGAATGCCTTTGTAAAAAGAGATACATGACAGGTGCAAACAGAATATCCGGAAGCACAGTCGAAGAAAGAGAGAAAGCAAGAGccgaatataaagaaaaaagaaattacttgaaaaaaatgataaaagacgCGAAGAAACACTCCTGGAAAACTGTTATAGAGGAAGTTCAAAACGATGTTTGGGGAAAAGGCTACCAAATAGTGACAAAAAGATTTCTACTAAGACCGAAAACAGAAATCTCACAGGATATCATACTTAAGGAAGCAAGTggactatttccaaaatatgaaataaccaCCTGGCCACATATTGACATGGTGAGGACGGATATAATACCATGGACACAGGAAGAACATGTAACGgcagcaaataaaataaaaccaaagaaGGCGGCTGGACCAGATAAGCTATCACCAGAGATAACTAAGTGTGTAGTGAAATACCTGCCAGAAAAGTGCCACGATGTGATGAACAGACAACTGTATGCGGGGGAATTTCCCAAAATATGGAAAGTGGCGAAACTAGTGCTAATAGAAAAGCCCAAAAAAACGGACGATTTAAAAACGTCATACAGGCCACTATGTATCCTGGACTGCATGGGAAAAATTCTTGAACACATCGTCAAAAATAGATTACTTGCGGAAATAGAAGCAAGAGGAGGTTTTAGCAACTCTCAGTTTGGGTTTCAGAAAGGTATTTCCACTGTGGATGCACTAGCTAGAGTTCTAGAAATCGCAAAAGAAGCAAAACATGTGACATGGGCAAACCGTAAGATATGCTTACTTGTAACGGTAGATGTAAGAAATGCATTCAACTCCGCACCATGGAGAGGAATAGCTGACAGCTTGAAAAAGCGAAACATATCGCCATACCTAATGCGCATGATCACAAGTTATCTAACGGACCGGACACTACTTGTAAGTAATACCATTATGGAAGTAACTTGCGGTGTCCCACAGGGCTCGGTACTTGGCCCTCTCCTATGGAACTTATATTATGACGACTTGTTGCAACTGGATATGCCAAGTAGCGTAAAATTGGTGGCCTACGCTGACGATCTTGCAGTAGTAATAACAGGAAAGATAAAGACACAGGTAGTAGTAGAAGCTAACATCGCTATTCAAAGAATAGCTGAatggatgcatttgaaaaaacttgatctTGCACCTGAAAAAACAGAGGCGGTACTTTTGGGTGATCTAAAGGAAGCAAGAAGACTCACCATCGAAGTCTTGAATAACGAAATCACTACAAAACcgcaaattaaatatttgggtgTAACCCTAGACACAGGTGCTacaatgaaaaaacatattgaaatcGTCTGCAAGAAAGCAGAAGCATCTGCTTTGTTTCTAAGTAGAATAATGCCGCAAAAAAATGGGCCTACGAAAAATATTATGTGCAGTAACTCACTCGATTTTGTTATATGCGTCTCCCGTATGGCTGAGGAACGATACAAAACAAAAGGCAAACAAAGGAATGAGAAGATAGAGATACGTACTGAAGCATTAAATCGGTGGCAGGACAAATGGGAACAAGCAGTAACTGGACAATGGACTAGAAGACTGATTCCAAATATTAGAACGTGGGTAAACAGAAAACATGAAGAGgaaatgGGAAAGGTTAAAGCTGTTGATCCAAGAAAATGGACGGAAAAAAATATGCAGAAGGCGGTGGAGGAtgtaataaataagaaaatgggAGTAAATGAAGCGAGTCgtttatatgaaataccttCGCGCACATTGCGAAGACACATCCTTAAGGGTTGGAGGTCTAAGCAGAGAATTGGAAGACCTTCTGAATTGGGATATGAGAACGAACTAAAACTTGTAGCTCACATTAAAAAGCTTGAATCCATCGGATTTCCCTTGGAGCCATCGAGACTGCAGTCTATAGCTTACGACTTTGCTGAAAATCTTCGATTGCCACATCGATTCAATAATGAGAAGAAGTCAGCAGGCTGGGATTGGTTTCAAGGATTTATGAAGCGTCATCCAGACCTGAGTAAACGTAAAGCAGAAGGCCTGTCATTGGCAAGAGCTAGTGGTATGAATAGACAGGATgtcgataaatattttgaaatgttgttGATGACTGATAACGATTTGATTAGTAAACCAGAAAGAATCTACAACATGGACGAAAGCGGAATACAAGTTAACAATAAAACTGGACGCGTAATTGCTAGCAAGGGTGCGAAATGTGTAAATACTGTAACCAGTACCGAAAAAGGTGAAAATATATCTTTGATTGCGTGCTGCAATGCGGAAGGTACTTTCCTTCCGCCTATTTTGATACTGAAGGGTAAATACAAAAAACCGGAATTTTGTGAGGGTCTACCACCTGGCTCAAATGTATACATGAATCAGAAATCATCTTACATCAACGTTGAACTATTTTTGAAGTGGATGAAAGAGCATTTTATACCACGAAAGCAAGATGGCAAGGTTCTTCTGATTTTAGATGGGCATTCTTCGCAttccaattcatatgaaatgcTACAATTGGCATCTGAAAACGATGTGATTATCCTCTGTCTACCAAGTCATACTACTCAGGCTCTTCAACCATTGGATAGAAGTTTTTTTAAGCCATTCAAAAGTTACTTGTCTAAAGAAGTTTCCACTTGGTTTATCAACAACAAAGGCCGACCTTTTAATCGATACcacatttcaaaaatgattgGTGATGCCTGGTTCAAGTCTGCTATACCAGCAATTGGCGTTTCAGGATTTAAAGCGACAGGGATTTGCCCTTATGATCCAAATGCTGTGCCTGAATATTTCTTCAGTATTTCTGATGCATCAATGGGAAGTATTCAGAATAATGATGATTCGCAAGCAATTAATAATCATTCACAGCCAACTCAGAACACTATTGCTCTTTCCTTGCCAAGTACATCCACATCTCtgattagtaataataataatcaagcCATTCAAATGTCCACATCAGAATCTTCTGAGACTGCACAAGAATTAACACCATCTAAGACCTTACAAATAATTAGTCCATTGCCtattattcaacaaaaaATGAATTGTTACGTTGGCGTTGAATTCCAGAACAATGGTGGAATTTCTCTTGTTCACTCTGCCTGGTTAACACCGCTTAAACGAGAAGTCTTTTGGCCGCCAAAACAGACAACcggaaattttataaaattattaaaatctggACAAGAGCCTCCCCAGGATAACAGCTGGAAACTTCACCAAATTAAGCGAATTTTTTTCCAGACTGACGACTATAAGATTgcggagaaaaaaattaaaaaggcTGAAATTACCTCAGATTTAACTACAGATGCTGAGGAATCAGCAATTATTTCACCTCGAAGGAAAATACGTCCAAAGAAATTTTCCACTGATGATGAGCAGGAAGAAGTGCTGTCATCATCAGAAgatgattttccaaaaaacaagaAACCCCTACCTAGACCAAAACCAATAATAAGGAAGTCTATTACAAACATATTATCTGATTATTCTGGCCCAATTCAAACTTTTCCATTAGCTTCAGCTGGACAATCGCAAAGGTCGTTTGAGGATAGTGATTCTACAAATCAACTTTATTATTTGCCACCTCAACATTCAGCAAAAGATACTCAATTGACTAAATCTTCAGGACAAATTATTAGagGTTCTGCGTCAAATCAGTCATTTTGCCAGGCTGCTGTTTCGAACTCGTCACCATATAATCCGTCAACTAGTAAAGCAACTGATGTACAGAGCAACATCAGAGCTGTAGTGGAAAGTAATGGagCAAACACTCAAGATGATGTAATCACTTTATTGAAGACCATTAGAGAACAgaacaatcaaattttgcagTGGATCCGAAAACAAGATCGCAGTGGCAATCACGCCAGTAATACAGATTTACCAGATGATATAGGCGTACAGTTTCCTTTGAATTCTCAAGAGGATATTACCAAATTGGAAACATACctgagtgaaaaaaataattgcttgGCTTTGTCGGCATATCTATCGACTTTTGGAGGGAGAGATTTTACTGGACATACAAAccgcattttaaattttttgttcacttaTTCTCTTGCAactaattggaatttttgtggCAAACGAGGTGAGAAAAAGGCTTTTAAAAACTTAAACGTAAAGGATGTGATTATTGgTGCTGTAAGAAAAAGCTCCCCTCTAGTCAGTcagaaagaaatagaagatacCATCAAGGTGTGGTTGAAACATGCAccagagaaattgaaaaagcagCAGCATGGCAACCcgtaa
Protein Sequence
MFGSWQVLDQETLSDHNYIFFEIPSLETQKVAPEKIIKGWKIEEKKIQYFISEIKQKIREETDTLNPQGLMAAIKKACQRTFQPTYNYSGTRKPVYWWSSQISEARKECLCKKRYMTGANRISGSTVEEREKARAEYKEKRNYLKKMIKDAKKHSWKTVIEEVQNDVWGKGYQIVTKRFLLRPKTEISQDIILKEASGLFPKYEITTWPHIDMVRTDIIPWTQEEHVTAANKIKPKKAAGPDKLSPEITKCVVKYLPEKCHDVMNRQLYAGEFPKIWKVAKLVLIEKPKKTDDLKTSYRPLCILDCMGKILEHIVKNRLLAEIEARGGFSNSQFGFQKGISTVDALARVLEIAKEAKHVTWANRKICLLVTVDVRNAFNSAPWRGIADSLKKRNISPYLMRMITSYLTDRTLLVSNTIMEVTCGVPQGSVLGPLLWNLYYDDLLQLDMPSSVKLVAYADDLAVVITGKIKTQVVVEANIAIQRIAEWMHLKKLDLAPEKTEAVLLGDLKEARRLTIEVLNNEITTKPQIKYLGVTLDTGATMKKHIEIVCKKAEASALFLSRIMPQKNGPTKNIMCSNSLDFVICVSRMAEERYKTKGKQRNEKIEIRTEALNRWQDKWEQAVTGQWTRRLIPNIRTWVNRKHEEEMGKVKAVDPRKWTEKNMQKAVEDVINKKMGVNEASRLYEIPSRTLRRHILKGWRSKQRIGRPSELGYENELKLVAHIKKLESIGFPLEPSRLQSIAYDFAENLRLPHRFNNEKKSAGWDWFQGFMKRHPDLSKRKAEGLSLARASGMNRQDVDKYFEMLLMTDNDLISKPERIYNMDESGIQVNNKTGRVIASKGAKCVNTVTSTEKGENISLIACCNAEGTFLPPILILKGKYKKPEFCEGLPPGSNVYMNQKSSYINVELFLKWMKEHFIPRKQDGKVLLILDGHSSHSNSYEMLQLASENDVIILCLPSHTTQALQPLDRSFFKPFKSYLSKEVSTWFINNKGRPFNRYHISKMIGDAWFKSAIPAIGVSGFKATGICPYDPNAVPEYFFSISDASMGSIQNNDDSQAINNHSQPTQNTIALSLPSTSTSLISNNNNQAIQMSTSESSETAQELTPSKTLQIISPLPIIQQKMNCYVGVEFQNNGGISLVHSAWLTPLKREVFWPPKQTTGNFIKLLKSGQEPPQDNSWKLHQIKRIFFQTDDYKIAEKKIKKAEITSDLTTDAEESAIISPRRKIRPKKFSTDDEQEEVLSSSEDDFPKNKKPLPRPKPIIRKSITNILSDYSGPIQTFPLASAGQSQRSFEDSDSTNQLYYLPPQHSAKDTQLTKSSGQIIRGSASNQSFCQAAVSNSSPYNPSTSKATDVQSNIRAVVESNGANTQDDVITLLKTIREQNNQILQWIRKQDRSGNHASNTDLPDDIGVQFPLNSQEDITKLETYLSEKNNCLALSAYLSTFGGRDFTGHTNRILNFLFTYSLATNWNFCGKRGEKKAFKNLNVKDVIIGAVRKSSPLVSQKEIEDTIKVWLKHAPEKLKKQQHGNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-