Dcar020725.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055263.1:16331929-16332378[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-13 4.2e-11 42.9 0.0 1 37 13 49 13 57 0.92 2 2 5.8 1.7e+03 -0.7 0.1 14 23 137 145 134 147 0.82
Sequence Information
- Coding Sequence
- atgGGAAAGGTTAAAGCTGTTGATCCAAGAAAATGGACGGAAAAAAATATGCAGAAGGCGGTGGAGGAtgtaataaataagaaaatgggAGTAAATGAAGCGAGTCgtttatatgaaataccttCGCGCACATTGCGAAGACACATCCTCAAGGGTTGGAGGTCTAAGCAGAGAATTGGAAGACCTTCAGAATTGGGATATGAGAACGAACTAAAACTTGTAGCTCACATTAAAAAGCTTGAATCCATCGGATTTCCCTTGGAGCCATCGAGACTGCAGTCTATAGCTTACGACTTTGCTGAAAATCTTCGATTGCCACATCGATTCAATAATGAGAAGAAGTCAGCAGGCTGGGATTGGTTTCAAGGATTTATGAAGCGTCATCCAGACCTGAGTAAACGTAAAGCAGAAGGCCTGTCATTGGCAAGAGCTAGTGGTATGAATAGATAG
- Protein Sequence
- MGKVKAVDPRKWTEKNMQKAVEDVINKKMGVNEASRLYEIPSRTLRRHILKGWRSKQRIGRPSELGYENELKLVAHIKKLESIGFPLEPSRLQSIAYDFAENLRLPHRFNNEKKSAGWDWFQGFMKRHPDLSKRKAEGLSLARASGMNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458789; iTF_00458790;
- 90% Identity
- iTF_00458789; iTF_00458790; iTF_01076315;
- 80% Identity
- -