Dcar006612.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055254.1:32005877-32009572[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-15 2.2e-12 46.9 0.1 3 45 68 110 66 110 0.92 2 2 0.84 2.5e+02 2.0 0.3 6 18 178 191 174 196 0.81
Sequence Information
- Coding Sequence
- ATGAAAAATGAACCTTTAGAAGATGCACAATCACCGTATACAGATTTTATCCCAATGCACGAAGAAGAAGAGAAACTAAAAATGGCAATACCTTCCTCATCTCCGCAGTCGTACTCACACGAAATGCGTGGTGTTACAGGTATTGCCACGTACGTTCCTACTCAAAAACCTGAATGGAAACGATATAAGCAATATACCAGAAATGATATAATGTCAGCTATAGAAGCTGTAAGGAATGGAATGTCGGCATTACAAGCTGCTCGAAAATACGGAGTACCTTCTCGAACGTTGtatgacaaagtaaaaaaattggGGATAACTACCAGCCGTCCGTTTAAGCGTGGCAGCAATGGAAGTTCGGCGTGTTTTTCATATAATACTGGTTCACCATATAGTGGTCATCTTTCTGAATCCGACGAAAATCCAatgcataataataataattctgcATTACTTGAAGCCAGCACATTTCTTCAGCACGCTCTAGATGGCAGGGGTGGAGATGAACGAGAAGCATTGGCTGCAATGGCTGCTGCTGCTGCTCATGCTGTCGCCTCAGGACATTCTACCAGTCCGAATAATCTTGGAAAAGCTAGAAGTCCCAGCCCTAGTCCTACAATGTTAAAatATATGAGACATGTAAGCTTAACTCCTTCACCAGCTGCTGGTAGCGAGCATCATAATTCTCATAGTGAAACTAATGGGAGTTCAGAAAGGGAACAAGAAGATGAAGATCAAGTTGAAGATCTCTCGATAAATAGGAAAGAGCATAGAGAAAGAGAATCGACAGGAGTGATCATGCCTCCCATGAACCAAGTTGCTGCTatagttaaaaaagaagaattgctGGTAGAAAACCTCAAAGAGGAATCTAGAAGGGAAGTAACTTTAGATTGTGAAGGGGAATGA
- Protein Sequence
- MKNEPLEDAQSPYTDFIPMHEEEEKLKMAIPSSSPQSYSHEMRGVTGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFSYNTGSPYSGHLSESDENPMHNNNNSALLEASTFLQHALDGRGGDEREALAAMAAAAAHAVASGHSTSPNNLGKARSPSPSPTMLKYMRHVSLTPSPAAGSEHHNSHSETNGSSEREQEDEDQVEDLSINRKEHRERESTGVIMPPMNQVAAIVKKEELLVENLKEESRREVTLDCEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -