Dvan022075.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000299.1:1261100-1263889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.024 2.6 9.7 0.7 2 23 183 205 183 205 0.97 2 13 0.00024 0.027 15.9 1.1 1 23 214 237 214 237 0.97 3 13 3e-05 0.0033 18.8 1.3 1 23 249 272 249 272 0.97 4 13 9e-06 0.001 20.4 0.5 2 23 301 323 300 323 0.97 5 13 0.00031 0.035 15.6 1.3 2 23 333 355 332 355 0.96 6 13 0.01 1.2 10.8 1.0 2 20 360 378 359 380 0.92 7 13 0.024 2.6 9.7 0.1 5 23 382 401 381 401 0.94 8 13 0.00021 0.024 16.1 0.6 1 23 427 450 427 450 0.92 9 13 4.6 5.1e+02 2.5 0.2 2 22 457 476 456 478 0.70 10 13 0.00049 0.054 15.0 0.8 2 23 484 505 483 505 0.97 11 13 0.54 60 5.4 0.5 3 23 513 535 511 535 0.92 12 13 0.012 1.3 10.6 0.2 1 23 571 593 571 593 0.97 13 13 0.14 16 7.2 2.0 1 23 599 622 599 622 0.96
Sequence Information
- Coding Sequence
- atgtcaataacAGAAGAAAAGATAAAcactaatgatattaaaatagagAAAGAAGATGAGAGTAGAAAGGACCCAACTTCATTTCTGCCAGAGGAACCTATGacatatgaaattaaaactaagaaaaagaaaaaaaagaaaaaacaagaaGACCCCTTTAAAGATATTGAAGAGAAAGTGTTATTACCAATTACCACTGTATTTGAATCTACAACAGAAAGTGAAGTGGAGACAAAGCAGGTGTTGGATCCTgaagttaatataaaagtagAGAACATAGAAGTTGAACTGGATTTTAATGATtttgcAAATGACAATGGATTAATGTTAGAAGGTCCACAGAGTGAAGACAGTCAAGAGCCAGAAGTTAAAATAGAGGAGCAAAACCATGAAGCAGTGTTACTTACATTCGAAAGCATTATATCAGATAAAAGTGTTATTGGCTTTGGACCTATTGCGCCTGCGCCTAATTATAAGAATAGTTTAGTTGcacatattaaaagaaaacacgGACCCGATTCGTCAAACGATGATGGCGAAGAACGAACTTGTGAAGTTTGCGCGTTGGTTTTCAAAGGGATGACCAGGTTAAGAATGCATATGAGAAGGAAGCATGGTTCTTTTGAAGAATCCTTTAAACATGTGTGTAATGATTGTGGCCTGACGTATGATAAATATAGAAGTTTAATAGTCCATAtacaaagaaaacatacaaatgagaaaaaaccGGTGCTAGACCAGTGGTATAATTGTCCATTTTGCCCCAAAGTTTTTACTAAAAGAGAAACGTATGCGAGACACGTCCAAAGGAAACATCGTGTGAACGATGAGGATGAGGTCAAACAAGAAGAATCTAGAACTTTActtgaaaatttcaaaaatgaaGCCACTGGTGAAATTACGTGTAACGAATGCCCGTTGGTTTTCTCATCGCTCAATTACTTGAAGTTACATATGAGAAGAAAGCACAATGCTCTAAAAGAGGATTTTCGCTTAAAGTGTCGAATATGTAACTTGTCGTACGATAAAATTGAGAGTTTAAAACGGCATATAAGGCGGAAACACGACAAGGGGTCGTATTGTGACGTGTGCGATAAACAATTTGAAACTAGAGAGAGTTACTTGAGTCACACACATAAGAGAATGTGTCCGGAGAAATTTCCCGATGAATTTGAATTGTGCCGCCATATTAATTTAGCGCACGGGAAACTTCAAAATGGGGAAATCGGAAGTGAGTTGTTAGAGATCAAGAAAGAGGAAGTAGATATTCCAGATACGTTCCAATGCTCGAAATGTCCGGAAAATTATAGCAGCTGGGACGAACTGAAGTTACACTTCGAGCAAAACCACTTAATGGTCGCGGTGACACAGTGTCAAATTTGCGGCGAAATTGTTCCCGGGAATGAgttagaaaaacattttaaaaactacCACACAATTACATCGGTTCAATGTAAATATTGTGAATATGAAACATCAAATCGTGCGAGTATGACACAACATATGTTACGTCACAAAAATGCGACAACATTAAATTGTGATTTTCCCGGTTGTAAATACAAAACGTATTACGAAGGTGCTATGGAGAAACACAAAAGAAAGCATAGAGATCAAGGCGTCAAGTTGCAATGTACGCAATGTCCGTTCCAGACTATGAATAAGTACATACTTAAATATCACGAAGAAGCTCATACGACTGGGAAAAAGAGGTATTCCTGCGACCAATGTGATTATGCAACAATATTACCAGCTAATTTAGTTCAGCACAAATATAAGCATTCGTCGGAAAAGAGATTTAAATGCGAAGTCTGTCCGTTTGCAACTAAGTACAATACGTCGTTACGTTTCCACGTTAAAAAGAAACATTGTGATCTCCCAACATTCAGTtaa
- Protein Sequence
- MSITEEKINTNDIKIEKEDESRKDPTSFLPEEPMTYEIKTKKKKKKKKQEDPFKDIEEKVLLPITTVFESTTESEVETKQVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPEVKIEEQNHEAVLLTFESIISDKSVIGFGPIAPAPNYKNSLVAHIKRKHGPDSSNDDGEERTCEVCALVFKGMTRLRMHMRRKHGSFEESFKHVCNDCGLTYDKYRSLIVHIQRKHTNEKKPVLDQWYNCPFCPKVFTKRETYARHVQRKHRVNDEDEVKQEESRTLLENFKNEATGEITCNECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRESYLSHTHKRMCPEKFPDEFELCRHINLAHGKLQNGEIGSELLEIKKEEVDIPDTFQCSKCPENYSSWDELKLHFEQNHLMVAVTQCQICGEIVPGNELEKHFKNYHTITSVQCKYCEYETSNRASMTQHMLRHKNATTLNCDFPGCKYKTYYEGAMEKHKRKHRDQGVKLQCTQCPFQTMNKYILKYHEEAHTTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -