Dvan008128.2
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000098.1:3315960-3318656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 15 7.2 0.3 1 22 92 113 92 113 0.95 2 17 2.7 3e+02 3.2 0.3 1 22 155 176 155 178 0.82 3 17 0.26 29 6.4 0.8 1 14 187 200 187 208 0.82 4 17 6.3 6.9e+02 2.0 0.1 2 22 216 236 215 238 0.84 5 17 0.056 6.2 8.5 1.1 3 21 258 276 256 279 0.93 6 17 0.02 2.2 9.9 5.3 1 23 285 308 285 308 0.95 7 17 0.13 14 7.3 0.0 1 23 334 357 334 357 0.90 8 17 0.0076 0.85 11.2 3.4 1 23 362 384 362 384 0.97 9 17 0.0038 0.42 12.2 0.2 1 23 390 413 390 413 0.95 10 17 0.00091 0.1 14.1 1.3 1 23 425 447 425 447 0.97 11 17 0.00059 0.065 14.7 4.0 1 23 490 513 490 513 0.96 12 17 0.0017 0.19 13.2 1.6 1 23 573 596 573 596 0.96 13 17 0.00049 0.055 15.0 2.3 2 23 618 640 617 640 0.95 14 17 0.035 3.9 9.1 0.1 2 23 646 668 645 668 0.93 15 17 0.0035 0.39 12.3 0.2 1 21 712 732 712 733 0.95 16 17 0.0005 0.055 14.9 0.6 1 23 743 765 743 765 0.93 17 17 3.6e-05 0.004 18.5 0.3 2 23 853 875 853 875 0.93
Sequence Information
- Coding Sequence
- ATGCAAACAAATTCCTACAATAGTGATGGAAATGAGGAAGAGTTAGACGAGACAGTTGATCCTAATGATACTGTTGACGGGGAAGGTGAAGATATAAAAGACCTAGATCCAAATAAAGTATATGTGACAAAAACACAAAGAGATTTTATACTTAAGTATAGAGATATTATTGAACAGATCAACACTAAACGTTGTTTATGTTGTAATAAAGAGCATCCACGTAGAAAAGCTGTTATTCAACACTTGCAAAAGAATGGCCACAAAGTACCTAAACATACGTGCTATAATTGCGTCGTAACATTTGGTCATATCGGGGCCTTATTGAGCCATATGCGATCAAACACGTGCACAGATTTGTGGAAAATTATCTACAATGAAAATGGTATAACTGACGATATAGTACTGGAAGATGAACCCAAAGATTCGAAAGTTCAATACAAAGATATTCTGAATGCTAGGTCGTACGCATGCAAGCTATGCCCGGCCAAGTTTcaactaaaacaatttattatgaaGCACGTACTTGATGTACACGAGGATGGGCAAACTCGTGTTCCTCATTCGTGCGTGCACTGCGGACTACGCTTCAAAGATAAGACTATTGGTAAAAGACACATTCGTAATGGGGAATGTACTGTATACATTTCATGTGATTTATGTTCTGAGAAGTTTTTGAATTTACAAGATTTTAACGATCACGCCATAGCGGTGCACGCGGGCAGTTTCGACCCAGACAATCAGAGTAAGTGCGTCGACGGCCGACCCACAGACTGTCCCATATGTGGAAAGAAGAACACCAGTTACCCGAATTTGGTGAAACATTTGAAGTGTATACATAACGAGGAGAAACCTCACCACTGCCAGCACTGTGATTCTAAATTCGAGCAAACTGCTGATCTTAACAAGCACATCTATATGGAACATTCTGATAGGACGCTTGGTATGCAGTCTTCTGAGCCCGATATGACTCTAGTGAAAGAAGAAGCGGAAGAATACCACTATTCGTGCACAGAATGCAATTCTATCTTTGAAACTGTTGATGCGTGGACAGATCACCAAGTAGCGGAACACAATCAAGTGGCTCACCACTGTGATCAATGTGAAAAGAAGTTTTTACGTCCGTCAGAGCTAGCGGAGCATAAGAATACGCATTTGAGAGTCAAGTTCTATCCTTGCAGCATTTGTACTAATTCTTATAGCACACCTCAAAAATTATCTGAACATGTACAGCAGGTTCACCCTGGAGCAGGAAAAACCCCTGGAGACACGGAATTCTTTTGTGAAATCTGTATAAGATCATTTAAGAGTCGGCAAGCTTATTCTAATCATATGCGTATTCATGCCAAAGTGCCTACAACTAATAGAAAGCCAGGAGAAAATAAAGGCTTTGCACCACAAATTATTGGAAAACCGATACGTCAGTTTTCTATGCAGCCCGGTTTCAGTCCATATGTTCCAAACGCACCTTATTGTTGTGATATTTGTGGAAAAGGATTTatgcacaaaaaaaatatatggaaacatAAAAAGGTGCTACACGCTGACCTTCTCGCTGATAGAAATGATAGCGAAGAAAACACAATGCAAGCGTCTACTGAGGAAGATGACTACAATATTGACGAAAATGGCGCTATTTTGTCGACTCCGCAATTTAACAGTTTTAACTTCACAAATTTATCGAATAACATGCAGCAAACCTCTCAAGATGCCTTACCATACTCTTGTGAATTATGTTACAAGAGATTCCCTCTAAGAACAAGCCTTTGGAAACATAAACGGGCAAAGCACGGAATTAGCGCCGGAAATACTTCGGAAACACAAACACAGCCTTCAAACGAAGGCACGAGATCGAGCTGCACTATTTGCAAAATAACATtcacagataaaaaatcttactaccgcCATAGAAAGAATGTTCACAAGTCATCAGTACAAATGTGCAAAATATGTGGAAAACCACTAAATTCGACGTTAGAACTTTATGAGCATCTAAAGGCGGCACATGCTCGGGAACTCCTAGGCTATAATTCTAATCAGAGTTCGAGTAAATCACAAGACGTGAGTCAAGACATGGACGTAGAAGACGATGTTGAACAGGACTCTATCGACCCCAGTATTGACTACCAGGCACGATACCCCTGTGACAATTGTGGAAAACAGTTTGTGGGGCTCTTAGCTTTACAAAACCATCAGTGTATCAATCAGATACAAAATCAACCACAAACATTTGACTGTGAAATTTGTCACAAGAGCTATACTTCCATAGCGGCCCTGAAAAGTCACCGCGGCTGGCACTTGCGATCACCCGACGGGAAAGCCGCTGCGAATAACACGGGACTCTGGATGCCACAAAACAAAGTGACGAGTAAAGTCAGCAAACACGAAGTGGTAGACGTTATTCAAAATACTCGCTCCGTGACATCGGCGAACTTAGCCAAAAGACGGTTACCGCCAGAAGTTGAAGTGACCGTAGTCAACCCGAATAAGAAACTGCGATCTGACGATTCTATAGAGATGGaccatcaaaataatttatccgGTGGTCCAGAAGATAGGTACTGTAACATCTGTGACAAAGAGTTCACGAAGCGAGCCGCGTATCAGCGTCATATGGACGAAGTGCACCAACCGAATTCCTGTGTTCTGTCCCGTGTGTGA
- Protein Sequence
- MQTNSYNSDGNEEELDETVDPNDTVDGEGEDIKDLDPNKVYVTKTQRDFILKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDEPKDSKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQTRVPHSCVHCGLRFKDKTIGKRHIRNGECTVYISCDLCSEKFLNLQDFNDHAIAVHAGSFDPDNQSKCVDGRPTDCPICGKKNTSYPNLVKHLKCIHNEEKPHHCQHCDSKFEQTADLNKHIYMEHSDRTLGMQSSEPDMTLVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPQKLSEHVQQVHPGAGKTPGDTEFFCEICIRSFKSRQAYSNHMRIHAKVPTTNRKPGENKGFAPQIIGKPIRQFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDDYNIDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCELCYKRFPLRTSLWKHKRAKHGISAGNTSETQTQPSNEGTRSSCTICKITFTDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNSNQSSSKSQDVSQDMDVEDDVEQDSIDPSIDYQARYPCDNCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTSKVSKHEVVDVIQNTRSVTSANLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHQNNLSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSCVLSRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -