Dvan024023.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000331.1:13012-14439[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00022 0.025 16.0 2.3 1 23 117 140 117 140 0.95 2 10 3.4e-05 0.0037 18.6 2.5 3 23 149 170 147 170 0.94 3 10 0.26 28 6.4 5.3 2 23 178 200 177 200 0.95 4 10 2.7e-05 0.003 18.9 0.4 2 23 208 230 207 230 0.94 5 10 0.0014 0.16 13.5 5.2 1 23 237 260 237 260 0.93 6 10 0.0017 0.19 13.3 5.3 1 23 266 289 266 289 0.94 7 10 6.4e-05 0.0071 17.7 0.3 2 23 297 318 296 318 0.97 8 10 0.0012 0.13 13.7 2.2 2 23 326 348 325 348 0.96 9 10 8.5e-05 0.0094 17.4 3.0 2 23 355 377 354 377 0.94 10 10 4e-05 0.0044 18.4 3.8 1 23 387 409 387 409 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAGGAATGTACCAGCAACCGAAGATGGAGAAGTATTCTCCCAAATTGGAGGACTTTCCGCCCAAAATCGAAGGTCATTTCCTAGAACCGAACACCGATGACCAGTACCCGCAGCCTAGCATGCCACAAAACTATTCTATGCCTAAAACAGAAGAAACAACATATAATGAACCTCAACCACTTCCAGAACAAATGATTCCTCGACCAGGTCCCCAACCGAACAGACCTCCAACTAAATTCATATCTGTAACAAGTGAAGCACTCACAGAAGAACAACGTGCTATGTACGAATCAGTTCTGTCCACTTGGAAACCGATCATGTTCCCAAAAAGAACAAAACGGTACATATGCCAAAAATGCAACAAAGAatttaagaattatcaaaatcTCTACCTTCACACTACTAGAGTGCATTCCTCGGAAGAATCTGCTGTGATTTGCGATATTTGCGACAAAACGttcaaaaataaacactatCTGTACATGCATAGAATGAATAAACATTATTCTGAATCAGAGAAATGTTACTGTCAGTTTTGCCTTCAAGAATTTCGGACGCGGCGAGCTCTCCACATGCACGTAAAGCGTATCCATCCGAACACATTGCCCGAAATCAAGTGTCCCGAATGTGGAAAAGAGTTCGCGGTTCCCTACAAATTGAGATATCATATCGAAAACTGCCACAGACCCGACAAAGACAAATACAAGTGCCCGATTTGCCAGAAATTGTACAAAAGCCACCTGAATTTGAACCGACACCTCCATTTCCAACACTCGCAAGTCGAGAGACACCCGTGCGTGTTCTGCCCAATGACATTTAAGTCGAGGCATCACATGAAGCGTCACATCCTCAATATCCATCCGCCACTCGAGTCCAAAGTAACTTGTCCGGAATGCCTGAAGGAGTTCAAAAACGACCAATACTTGAAAGAACACATGCAAGTGCACACCTCCTTCGAAAAGAAAGTGAAGTGCGATTTGTGTGATAAATTCTTTCATTCGGCGGTTCGTTTAAAGAAGCACAAGAAAATAGTACATCCAGATAAACCGAAGATTCGATGTGAGAAATGTGACAAGGAGTTTGCTCATGCCCACTATTTGCGGCGTCACAATAATTCTGTGCACGTGGAAGTGGACGAAAGTCAGTACCAGCACGAATGTGAGCAGTGCGGCAAAAAGTTCAAAATAAAGAGATATCTTAACAACCATTTGCAAAGACACGAGCAACAACACCTTAAGCGTATTTCGCAAATGGTCAAAACTGTGATGGACGACGGGGATTCCCCCGCGAAGACCGTCAAAAAACGGGGCAGACCCCGAAAAACGGAGCGGAAAGAGATCGAATTTATTAAATGCGAGCCGGTCTCCAGTTCGGAGTCCGGCGAATCGGAATCCGGTGAATCTGAGTCGGAATCAGATTAA
- Protein Sequence
- MEEGMYQQPKMEKYSPKLEDFPPKIEGHFLEPNTDDQYPQPSMPQNYSMPKTEETTYNEPQPLPEQMIPRPGPQPNRPPTKFISVTSEALTEEQRAMYESVLSTWKPIMFPKRTKRYICQKCNKEFKNYQNLYLHTTRVHSSEESAVICDICDKTFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKRIHPNTLPEIKCPECGKEFAVPYKLRYHIENCHRPDKDKYKCPICQKLYKSHLNLNRHLHFQHSQVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQVHTSFEKKVKCDLCDKFFHSAVRLKKHKKIVHPDKPKIRCEKCDKEFAHAHYLRRHNNSVHVEVDESQYQHECEQCGKKFKIKRYLNNHLQRHEQQHLKRISQMVKTVMDDGDSPAKTVKKRGRPRKTERKEIEFIKCEPVSSSESGESESGESESESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265142;
- 90% Identity
- iTF_00778945;
- 80% Identity
- -