Dvan023531.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000318.1:2533561-2537161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.35 39 6.0 0.7 1 20 250 269 250 271 0.93 2 10 0.0024 0.27 12.8 0.1 2 23 300 322 299 322 0.95 3 10 0.00067 0.074 14.5 0.2 1 23 345 367 345 367 0.98 4 10 0.00022 0.025 16.0 0.2 1 23 371 394 371 394 0.96 5 10 0.14 15 7.2 0.5 1 14 399 412 399 413 0.91 6 10 0.0016 0.18 13.3 0.4 2 23 429 451 428 451 0.92 7 10 1.2e-06 0.00013 23.2 1.8 1 23 458 481 458 481 0.98 8 10 0.037 4.1 9.0 2.7 2 23 488 509 487 509 0.97 9 10 1.3e-06 0.00015 23.0 1.5 1 23 515 537 515 537 0.98 10 10 7.4e-05 0.0082 17.5 1.4 1 23 543 565 543 566 0.95
Sequence Information
- Coding Sequence
- atggaaaataatttgaatagtgTGCGTTTTGGTAAATGCCGATTTTGCTTCAGCAAAGGAAACCATAGAGATATTATGATGGAGTACAGTTGGAACGGCGTACGCGAAGTTTATTTCGATATTTTCCaagaatgttttaatttatatTTATGTACTAATGGAAGAAGTTCTCTTATTTGCGCATCTTGTATTAACAAATTAAGGGACGCGAGCAGCTTCCGTTTGATGGTTGTTAATGCTGAAAGACAACTGTTGGATACTTTAGATGAGAAACAGACATTTTTCATTAATCTAAGAGAGCCATTAATGGAAGTTGATGTGAAAGTTGAAAAAGATACAGAATTTAAAAGAGAGGAGAACAACTTTgatggaaatttaaattatgatgatgataatgatgatgccTTGGATAAATATGATGaCATGTCACTAGACCACCTGTCGAATACTGATGATTTAGTTGATGGTGAAGCGGAACTGCTCGCAAGATTCCCTCCTGGTACATTGAAACCTTTGCCCACAAGAAAAACAATGGAGTACACGTGTAAACAGTTTGTTAAGgaattagaattattaaaagGTAAAAATATAACAGGTAGCTCAATAAGAAGCTTAGTGACTGATTCAATACCACATAGAATTAGGCACAAAGTGTATATGACAGAAAAGCTAGCTCACATTGCCAATGTTTCGACCATTCTAGAACATTCCAATTTGACCGCTTTTAAGACTAGGCGACGGTCTGGCTTCCCCTGCTTTTATTGCAGGCGTATATACGAAAATTTTGAAGTTCTAAGAGACCATCAATATAAAGACAGGTGCAAggcaaatttaaagaaaatgctAGCAAAGTTCATAGTGGAGAGGCTTGTAGTGTATGTGCATATAACAGAAATTAAATGCACCATATGCGATCAGGGTGTAGCCAATTTGAACGAACTGAAGGCGCATTTAACGAGGACTCACAAAAAGAAACTCCATCCGGAATATGGGGATAGGATAATCCCTTTCAAAATGACCAAGAACAACGAGTACGAGTGTCAGAGTTGTggttttaattttgaaactttCGGCGCGATCGAGCGTCACATGAACGTCCATTATAGAAATTTCGTGTGTGATCAGTGCGGTGCCGGTTATGTGACCCAAAGTCGTTTGAAAgtgcatttaaaatattcccATATACAGGGTGTTTTTCCGTGCGATATATGTGCTAAAGTGTTCAATACTCAGTACAAACACAAGTGTCACGTGGACGCAGTTCACAAAATGGTGAAGAAGAATAAGTGCCCGAAATGTCCTGAACGTTTCACGGATTACTTCGACCGTCAACAGCATATGGTGGAGGCCCATGGAGAACAACCTCTAAGGTATAGATGTAATGTATGCGATACTGTGTTTAAACGTCGTTACGCTTTGTCTTTGCATATGAAACGCCGCCATCTTGAAGTTAAGGAGAAAGAGTGCGATTTATGTAGTTACAAGTGTCACACTATAGCGGAGTTAAAGGCTCACATGATTAAACACAATGGCGAAAGGACGTATGAGTGTATGGTCTGTAAGAAGTCGTATGCCAGGAAGAAAACGTTGAAAGAGCACATGCGTATACATAACAATGATCGTAGGTTCGTGTGTGTGGTCTGTGGACAGGCCTTCGTTCAGAATTGTAGCTTAAAAGGTCATATGAAAGCTCATCATGCTGATTATAATATGGGTTTAGGCAGGAGTTAG
- Protein Sequence
- MENNLNSVRFGKCRFCFSKGNHRDIMMEYSWNGVREVYFDIFQECFNLYLCTNGRSSLICASCINKLRDASSFRLMVVNAERQLLDTLDEKQTFFINLREPLMEVDVKVEKDTEFKREENNFDGNLNYDDDNDDALDKYDDMSLDHLSNTDDLVDGEAELLARFPPGTLKPLPTRKTMEYTCKQFVKELELLKGKNITGSSIRSLVTDSIPHRIRHKVYMTEKLAHIANVSTILEHSNLTAFKTRRRSGFPCFYCRRIYENFEVLRDHQYKDRCKANLKKMLAKFIVERLVVYVHITEIKCTICDQGVANLNELKAHLTRTHKKKLHPEYGDRIIPFKMTKNNEYECQSCGFNFETFGAIERHMNVHYRNFVCDQCGAGYVTQSRLKVHLKYSHIQGVFPCDICAKVFNTQYKHKCHVDAVHKMVKKNKCPKCPERFTDYFDRQQHMVEAHGEQPLRYRCNVCDTVFKRRYALSLHMKRRHLEVKEKECDLCSYKCHTIAELKAHMIKHNGERTYECMVCKKSYARKKTLKEHMRIHNNDRRFVCVVCGQAFVQNCSLKGHMKAHHADYNMGLGRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079334;
- 90% Identity
- iTF_01182132;
- 80% Identity
- -