Dvan015157.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dione vanillae
Gene Symbol
-
Assembly
GCA_037178615.1
Location
JAZFAU010000190.1:139819-152811[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.6e-05 0.011 17.2 0.1 3 23 154 174 153 174 0.97
2 17 8.7e-07 9.6e-05 23.6 1.2 1 23 180 202 180 202 0.99
3 17 5.4e-06 0.0006 21.1 2.7 1 23 208 230 208 230 0.99
4 17 3.6e-06 0.0004 21.7 2.6 1 23 245 267 245 267 0.98
5 17 4.9e-05 0.0055 18.1 3.1 1 23 282 304 282 304 0.98
6 17 2.2e-05 0.0025 19.2 0.8 1 23 319 341 319 341 0.99
7 17 0.00015 0.017 16.6 2.8 1 23 347 369 347 369 0.98
8 17 5.3e-06 0.00058 21.2 2.0 1 23 395 417 395 417 0.99
9 17 0.035 3.9 9.1 1.8 1 23 424 446 424 446 0.98
10 17 5.8e-07 6.5e-05 24.2 2.3 1 23 452 474 452 474 0.99
11 17 0.04 4.5 8.9 1.8 1 23 481 503 481 503 0.98
12 17 2.4e-06 0.00026 22.2 1.5 1 23 509 531 509 531 0.99
13 17 0.0001 0.012 17.1 0.8 1 23 538 560 538 560 0.99
14 17 2.2e-06 0.00025 22.3 1.9 1 23 566 588 566 588 0.98
15 17 0.0019 0.21 13.1 0.3 1 20 594 613 594 616 0.93
16 17 1.5e-05 0.0017 19.7 1.1 2 23 623 644 622 644 0.96
17 17 3.4e-06 0.00038 21.8 1.4 1 23 650 673 650 673 0.97

Sequence Information

Coding Sequence
ATGGGCGTCGGGGGTGTGGCACGGGGCGTGGGGGTCCCCGTGCCGCCCCCCGGCGACCTACTCGCCACGATATCTATGTTTGAACAACAGATCAAAGCAGAGCCTATGAGcttttaCCCACATCCCCATGTAAATACTGGCCCCCCTACAATAATCCGTTCAGATACAAACCATGGTATAATTAACATGAACCAACACCATCCAGAAGATTCAAAAGATAGTCTTATAGTACAACAACAAGTACAACACCAACAAGAGCTGCTGGAACAGCACCAACATGAAGAGTTAAATGAAGATGAGGTTGATAATttaagtTTCAAAGGAATGGAAGATGAAGGAGTTGAAATGGATATGGACGGCCGTGGCTGTCCTCAGGGTATGGGAGTTGACATGGGATCAGTTCAAACTAAAATGGAAATGGCCAATGGTGGTCAAGTACCAAGATCCAAACCACAAGCCTGTAagGTTTGTGGGAAAGTCCTTTCATCTGCCTCATCTTATTATGTGCACATGAAGTTGCATTCAGGAAATAAGCCCTTTCAATGCACGGTGTGCGACGCAGCATTCTGCCGCAAGCCGTACCTAGAGGTACACATGCGGACGCACACCGGCGAACGCCCCTTTCAATGCGACCTCTGCCTTAAACGCTTCACGCAAAAGTCAAGTCTCAATACGCACAAACGTGTCCACACTGATGAGCACATGCGGGCTCTGATGGTGAAGGAGCGTCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGTTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGAAAAATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGCGACAAGTGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTACACGAAAAGATACATACGGTGCAAGGGCGACCTTACACGTGCGGGCCCTACTCGGACACTCACGTGCGCACGCATACAGGCGAGCGGCCATATCAGTGCGACGCGTGTCTCAAACGCTTCACGCAGAAGTCCAGCCTCAATATACATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCCTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACTCACACCGGCGAGCGCCCGTATCAGTGTGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTGAACATCCACAAGCGGACGCATTCGGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCACGGAATGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGCGAGCGCCCCTTCGAGTGCGATGTGTGTTACAAACGCTTCACGCAGAAATCTACGCTCAACGTTCACAAGCGCATCCACACCGGGGAACGTCCATATGCATGTGATATTTGCCAAAAACGATTTGCTGTAAAAAGCTACGTAACAGCGCACAGATGGTCCCACGTGGCAGACAAGCCGCTGAACTGCGAGCAGTGTTCAATGACATTCACGTCGAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCCAACGGGCCCTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTACCTCATACGACATCACAACCGCGTGCACCGTGAGAACCACAGCAACGTGTCCGCCAACAGCATCGGCACCATCAACAGTGTCGCCACCAACACCAACAATGGCGGCTTTGAAAGCCCCGGCGTTTGCGATTtaagCTTCGTGCCAATGGTGAACCGGTACATGACGCAGGGCACGCAGGTGTCCATGCAGGACTCACAGAGCAAGATGTCGGCGATGTCGCCGCAGTCCATCGCATCTATTTCATCTCCGCCGCCGCCGCACACGCCGACGCCGCAGCCGCAGCCGCAGATGTCGATGCGTCTCGCTGATTGA
Protein Sequence
MGVGGVARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYPHPHVNTGPPTIIRSDTNHGIINMNQHHPEDSKDSLIVQQQVQHQQELLEQHQHEELNEDEVDNLSFKGMEDEGVEMDMDGRGCPQGMGVDMGSVQTKMEMANGGQVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKWFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGPYSDTHVRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNVHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCEQCSMTFTSKSQFALHIRTHSNGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNGGFESPGVCDLSFVPMVNRYMTQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQPQMSMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00248309;
80% Identity
-