Dvan029939.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dione vanillae
Gene Symbol
pol
Assembly
GCA_037178615.1
Location
JAZFAU010000636.1:32836-36807[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-11 3.1e-08 34.2 0.0 2 34 18 50 17 55 0.93

Sequence Information

Coding Sequence
ATGACATCTACGAATACTACAACCAAAGAAAAGACCAGACAAACATGGGATAAAGAGGCAATGGCTAATGCAATTAAAGCTATACGAGATAAGCAAATGGGTTTCTTAAAAGCATCTAAAACATATGGAGTACCCAAAACTACGCTTATACGCTTATCGAAAATGGAAGATCAGTCACTTAGCGACGTGACGAACCATAAACTTGGAAGAAAATCGACTTTGCCGAGTGAATTGGAAGCTGAAttgtatgattatattttagaaatggaaaaatctggATTTGGTCTTACGCGCAGGGACATCAGATCTTTAGCTTACCAGTTAGcggaaaagaataatataaagcaCACGTTTTCTCAAGATAATGAATCTGCGGGAAGATCATGGTTGAAGTTGTTCCTTAAGCGCCATTCAAAGCTATCCTTTCGCCGTCCAACTGGCACATCAATAGCTAGAATGAAAggatttaacaaagaaaatgttaaagaatTTTTTGACTTTGATACCATCGAAAATCGTGGTGCAGATATTGACAGCGACCACATCCTACTCGTAGCAGAAATACGGCTCAAAGTAGCTGTGGCGCGAAAGGGCAACGTGACCACCAGGATGGGCAAACGGTTTGAGGTGAGCAAGCTTCGAGATCCTAAAATAGGTGAAGCCTTCAGACTAGAACTCCAAAATCGCTTCTCCACCCTCGCAAGGGATTCCACTTCTGTCAACGCGGAGTGGAACTACATAAAAATGGCCTACACAGAGACCAGCTCTGTCGTTCTTGGACATAAAATATTCACTCGCGAAGACTGGATGTCACAAAATACCTGGGACCTCATCAACCAAAGGCGTGAACTTCACCTCCAACTCCTAGCAACGGACGACGCTGTGGTGCGTGAAAACCTGAGGCTCCAATACCGCCTGATACGCAGACGCATATACCGCAGTACACGTCGAGATCGACGAATATGGGCGGAAAGTGTAGCGGATTGTGCCCAACGCGCTGCTGACTCCGGTAATCTCAGGGAGATGTATAAGGCAACGAAAGCCTTAGCCGGAAACCGAAGTCAGAGGAACAAAAAGCCCTTAAAAAACAAGAGAGGCCAGCTACTCGTGACATCGGAGGAACAGCTTCAACGCTGGCGGGAACATTTTGAGGAAACCTTCCGAGTCCCCAACGATCCCAATAATAAGTTGCCACCCGCTATCAGCCAACCTGCACAATGCCTCGACATTGACGTGTCTCCGCCTACTGGAGAGGAAGTAAAGGAGGCCATCTTGTCACTTAAGAGTGGCAAAGCTCCAGGAGCTGACCTCATTACGGCGGAAATGCTTAAAGCCGATATCCCTACCGCCGTAAACGCGCTTACACCTCTCATACGCAATATCTGGTCAGCCGAAGAATTGCCCGATGACTGGAACAAAGGCCTTCTCATCACCGTGCCCAAGAAGGGAGACCTTAGTGAGTGTGGCAACTGGAGAGGCATTACATTGCTCTCGACCCCATCCAAAGTGCTCTGCAGGATTATCCTGGATAGGTTGTCGAATGCCGTTGAACCCCTCCTTCGTAAAGAACAGGCTGGCTTCCGACCCAACCGATCGTGCACGGACCAGATCAATACTCTACGTATCATCCTCGAACAGGCATCAGAATGGCAGAGGGAAATATACATAACCTTCGTTGATTTCGAAAAAGCCTTCGACACGCTGAGGTGGAGCAGTATCTGGGCCCGTCTGCGGGAAATTGGAGTCCCCGAGAAACTCACTAACCTAATACAGGCCATCTACAAGAATTACTCTTGTAGAGTGACACATGACGGCCTCGTCTCGGAGGACATTCAAGTACGAGCGGGTGTAAGGCAAGGGTGTCTTCTCTCTCCTCTCCTCTTCCTTGTCGTTCTCGATGGCATTATGCGTAAATGTACCAGCAATAAGCGCCGCGGCATAGAATGGGGACTTTCCGGCACCTTAGAAGATCTGGATTATGCCGATGACCTATGTCTGCTAAGTCACACACGCGCCGATATGCAAGCCAAACTGGACGACCTACGTGGAGAAGCAACGGAGATGGGGTTAAAAATTAACACCCGGAAGACCCAGGAGATGAGGTGCAGAGCAACTAGCTTTCTACCGCTGCTCATCGGCACAGAGGTTGTGGAAAGAGTCCACAAGTTTACCTACCTCGGAAGTATCGTGACTGAAGCTGGAGGGACCGAGGAAGACATCGCCTCGAGAATCGCCAAGGGaagagcaaccttcgcacagtTGCGCCCCGTGTGGCAATCCCGGAAATTGACTAGGAGagttaagctcaaaatattccggtccaatgTTAAAACCGTTTTGCTATACGGGTCATGTGAGAAACCATGTGCCACATCACCGGTTCTACTGATTTTAGACGGCCATGCAAGCCGCACCAGAAATATCAAAGTTGTGGATTTAGCCAGAAAAAACCGTGTTCGCTTGCTGTGTCTGCCTCCACACTCAAGTCATAAAATGCAGCCACTTGATAAAACATTCATGGgtccattaaaaaaatacttgactGAAGAAATTCGCAAACGACTACGAATGCAACCTCGAGCAATAACACATTTTGACATTGCGGAATTATTTGGTCTAGCTTATGTACGAGCTCAGCGTGCAGAATTGGCCATTAGCGGTTTCCGTGCTACAGGGATATATCCCGTTAATAGACACGTCTTCGAAGATCATGACTTTATTGACGAAGACCTTCCAGTAGCAGAGGGGCCTTCTAATGACCCAGCGCGCGATATAACGACACCAATTGATATAATTCCTGATAACCCGATACCTGAGCAAAAGGCTGTTGTACCTGAACCCGATAACTGCCTACCTGAGACAAGGGTTGTTGCATCTCCCGCACCTCAATCTGTAATCAAACCATCACCCCAGAGTGTTGATGGAGATCATGAAGCAAATGCACAAACAGGAGTGTCAACACTGACTATGAATGACTCAATAGTTAGTCCCTCTACATCATCTAAATCATATTTTTCGCCAAAAGTGTTGCAGCCTATACCGCATTTAAGGAAAACTGTTAGCAACAGAGGAAGAAAAGCCACCAAACCTACAATCTTGACATCTTCCCCTTATAAACAAGATTTAGAGACGTCGTTACAGAAGAACTTAAAAAAAGATACGCCAAAGAAACTGCCAAAGAAGACAAAAATGAAaatgccaaaaaaaaaacagcccaaaagaaaagaaaaatcataa
Protein Sequence
MTSTNTTTKEKTRQTWDKEAMANAIKAIRDKQMGFLKASKTYGVPKTTLIRLSKMEDQSLSDVTNHKLGRKSTLPSELEAELYDYILEMEKSGFGLTRRDIRSLAYQLAEKNNIKHTFSQDNESAGRSWLKLFLKRHSKLSFRRPTGTSIARMKGFNKENVKEFFDFDTIENRGADIDSDHILLVAEIRLKVAVARKGNVTTRMGKRFEVSKLRDPKIGEAFRLELQNRFSTLARDSTSVNAEWNYIKMAYTETSSVVLGHKIFTREDWMSQNTWDLINQRRELHLQLLATDDAVVRENLRLQYRLIRRRIYRSTRRDRRIWAESVADCAQRAADSGNLREMYKATKALAGNRSQRNKKPLKNKRGQLLVTSEEQLQRWREHFEETFRVPNDPNNKLPPAISQPAQCLDIDVSPPTGEEVKEAILSLKSGKAPGADLITAEMLKADIPTAVNALTPLIRNIWSAEELPDDWNKGLLITVPKKGDLSECGNWRGITLLSTPSKVLCRIILDRLSNAVEPLLRKEQAGFRPNRSCTDQINTLRIILEQASEWQREIYITFVDFEKAFDTLRWSSIWARLREIGVPEKLTNLIQAIYKNYSCRVTHDGLVSEDIQVRAGVRQGCLLSPLLFLVVLDGIMRKCTSNKRRGIEWGLSGTLEDLDYADDLCLLSHTRADMQAKLDDLRGEATEMGLKINTRKTQEMRCRATSFLPLLIGTEVVERVHKFTYLGSIVTEAGGTEEDIASRIAKGRATFAQLRPVWQSRKLTRRVKLKIFRSNVKTVLLYGSCEKPCATSPVLLILDGHASRTRNIKVVDLARKNRVRLLCLPPHSSHKMQPLDKTFMGPLKKYLTEEIRKRLRMQPRAITHFDIAELFGLAYVRAQRAELAISGFRATGIYPVNRHVFEDHDFIDEDLPVAEGPSNDPARDITTPIDIIPDNPIPEQKAVVPEPDNCLPETRVVASPAPQSVIKPSPQSVDGDHEANAQTGVSTLTMNDSIVSPSTSSKSYFSPKVLQPIPHLRKTVSNRGRKATKPTILTSSPYKQDLETSLQKNLKKDTPKKLPKKTKMKMPKKKQPKRKEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-