Djun010707.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dione juno
Gene Symbol
Prdm1
Assembly
GCA_037127375.1
Location
JAXRJS010000048.1:319441-324224[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3e-05 0.0027 18.7 2.5 1 23 767 789 767 789 0.99
2 5 3.3e-06 0.00029 21.7 5.0 1 23 795 817 795 817 0.98
3 5 1.9e-06 0.00017 22.5 4.3 1 23 823 845 823 845 0.98
4 5 0.061 5.5 8.3 3.1 1 23 851 873 851 873 0.97
5 5 0.00011 0.0096 17.0 0.1 1 22 879 900 879 900 0.96

Sequence Information

Coding Sequence
ATGCGTGAAGACGAGTTTGAAAGGCTCACAGTGTACATAGTGCCTGACGTGCCATGTGAACGTGGTGTTACAAACAGAGCCGAAAGAACCCTTCCACGCAGTTTGGCCCTAAGACCATCTGCAGTACTGTCAACACCTAACACACCGaCCGAAGGCGTATGGAGTACTGGAGTTATTCCACGAGGCACAAGATTTGGACCTTTTGAAGGAACACGAACACCTAATAAACCAAATGACAAAGTATCTTGGCGATATTATTGGAggGTACAAGAAACTGTCAGACATCATACTTATGGAAATATTAAGatattCAAAGATAGTGATTACTATTACCTGGATGGATCAGACACGAGCGTCGCAAACTGGATGCGATATGTGGCTTCAGCATATTCCCTCTCCGTAATGAATCTCGTTGCATGCCAACATCaagaacatatttatttttatacaatccgtgacATACTGCCAAACGAGGAATTAATGGTGTGGTACTGTAAAGATTTCGCGACAAGGCTCGGCTACGATATTGACCCAGAAAGAGCAACATATTCcatttgTAAAgaagaaactataaaaaaagcttatggATTACCACCTGCACCAGTACACCCAGAAATTGCTTTTAATCACATGAAATACGTTCTCGGACTTACAAATACTAAAGAATTGCTAGAAGCAGAAATACCATGTAGGCGAAGAAAACGCGAAGCGAGTGATAAGTCATtgcatgaaaataataatcttccATCACGTGATGAGCTcagaagtacaataaaaaatgaaagaataGTCATGAGGCCGGACATTCCCTCCACTATCATTCATCAAAAATCTGATCCTATTATCAATGAACACCCGTCATTGATACCTAATAATTTAATGCAACCTCCTTCACCAGTAAAAGCTCATCACAGAGATAACCAAACTCTAATAATTCATCAACACAAAGAAAGTACATCACATGTTGTAATACATCAACTTGAAAATCCAAGACTTTATAACAACCGATCACCAGCCCAAAATATTCACATGAGAGATATGCGAGGACCTTCTCCAATGGCCTCAAACATTCAAGATAAGTTAGGTAGTAAGTCACCCAACTTTACCCATTGTGGACCTACCCATTACGAGCACCAGCTAACACCTAACGACGGGTCAGTACGATCAGATGAAGGTTATCATAGCAACGGCTACCATGATGAATTTACTCCCCCTGAAGATTCAAGTGACTCAGATGctgaaaattatgtattagattgttcaaataaaactaatgaaCCGAAAGAAACAGTTATAGTTCAAAAAATTGACCAGGACATGCACAGAAATGAATAtagaaaagtgaaaataaaaatgccaaGAGCTTACGCTCTAAACAAAGATATGGATTGTGAAAGTGAAAAGGAATTAATGATAACTGACGAAGTAATAAATAGCCCTCCACAAAATATGTCGCCACCACGCCGCGATCCAGCGACATCTACTGTTATTGTTCTTGAATCATCTCAAAATACTGTTGTCCCAATAAATAAACCATACTATGAAGATGGGACAATTTCACCAACTCCACAACCAGCTTTCATGAGATATTCACCACCAGATACTAGAATTCTTGAAACTATTCTAACTGGCAATAGAATTGACACTAATAACAATGACCCAAACAGAAGACAACCAAATGCTACTCCACCACCATCATCACCCACAGAAATGGCATATTCGTACAAAAAGAGCCAAAGGTATGGTAATGCCTGTAGTCCTGATTCTAGTTCCAATTTAACACCTTTGCCATCTTTACTACCACTACCACAGCAGTTACCAGCACCCAATTCAGTTTCTGTTTATTCTTCATCACCTCCTCATTCAATTCCTCACACTACAGAAATTCGTGAAATTAGAGAGATTAGAGAAATTAGAGAAACGCGATATGAAAGTCATTATCCTAATTATTCATATAGCCTCTACTCGCCGCCTAATTCCACAATAATAACACAGCTAGGCTCTCCACCAAGTACGTATTCTCCAGTTTCATCATCACATCAATATGAGAGGAATCAAACCGGACAAAATAATCATCATTTTCCTTCTTCAACTAGCGTTATAACGCTTAAAAATTGTTCACAATTAAGTCTTATTCAAAATTCCAATGTGAATGGTCAAATAGTACAACAACACGGTAGCATGAGCCCAGATGGTACTTGCAGTTTAATGGTCGCACCAATGAGTCCAAATTCACAATCATCACGGGGTTACAGAAGTTTACCATATCCTTTAAAGAAGAAAGACGGAAAAATGCATTATGAATGCAACGTTTGCTGTAAAACTTTTGGTCAACTATCGAATTTGAAAGTGCATTTAAGAACGCACTCAGGAGAACGACCTTTTAAATGCAACGTttgtaataaatcttttacTCAACTGGCTCATTTACAGAAGCATCACCTAGTGCACACTGGTGAAAAACCCCATCAATgtgatatttgtaaaaaaagattttcgtCTACATCCAacttaaaaacacatttacgTCTCCACTCAGGCCAGAAGCCGTATGCTTGTGATTTATGCATGCAAAAATTCACCCAATTCGTTCATTTAAAACTTCACAAGCGACTGCACACAAATGACAGGCCTTACGTTTGTCAAGGatgtgacaaaaaatatattagtgcgTCAGGCCTTCGCACTCATTGGAAAACCACTAGTTGCAAGCCGAATAACATCGAGGAGGTCCTAGCGATCACTAATGCCGCTAACACAGAATGTATAGGTACCGTCGACAAAGACTGCCACGAAAGAGAGGGGCACGAGGCATACGAAGTGCACTCGGCGTCGCACGGAGGGCTGGTGGGAGCCGGTGGGGCGCGAATGGGAATGTCACACAATGAAGCGCTAATGGGAGGGCAGGCACACTCTACCACACCACATCTGACCATGAGCCACGGGCAGCTTTCACCTGGTCCGGGTAGCCAGTACCGGTCGTTACTCCCGACCAGCTCTGATCACGAGCAGCAACATTACAGTTCAGGTGGCGGAGAAACCAGGCCGAGCGTCATAGAGTCGAACCAACCGCTTATAATCGAGTGTACCTGA
Protein Sequence
MREDEFERLTVYIVPDVPCERGVTNRAERTLPRSLALRPSAVLSTPNTPTEGVWSTGVIPRGTRFGPFEGTRTPNKPNDKVSWRYYWRVQETVRHHTYGNIKIFKDSDYYYLDGSDTSVANWMRYVASAYSLSVMNLVACQHQEHIYFYTIRDILPNEELMVWYCKDFATRLGYDIDPERATYSICKEETIKKAYGLPPAPVHPEIAFNHMKYVLGLTNTKELLEAEIPCRRRKREASDKSLHENNNLPSRDELRSTIKNERIVMRPDIPSTIIHQKSDPIINEHPSLIPNNLMQPPSPVKAHHRDNQTLIIHQHKESTSHVVIHQLENPRLYNNRSPAQNIHMRDMRGPSPMASNIQDKLGSKSPNFTHCGPTHYEHQLTPNDGSVRSDEGYHSNGYHDEFTPPEDSSDSDAENYVLDCSNKTNEPKETVIVQKIDQDMHRNEYRKVKIKMPRAYALNKDMDCESEKELMITDEVINSPPQNMSPPRRDPATSTVIVLESSQNTVVPINKPYYEDGTISPTPQPAFMRYSPPDTRILETILTGNRIDTNNNDPNRRQPNATPPPSSPTEMAYSYKKSQRYGNACSPDSSSNLTPLPSLLPLPQQLPAPNSVSVYSSSPPHSIPHTTEIREIREIREIRETRYESHYPNYSYSLYSPPNSTIITQLGSPPSTYSPVSSSHQYERNQTGQNNHHFPSSTSVITLKNCSQLSLIQNSNVNGQIVQQHGSMSPDGTCSLMVAPMSPNSQSSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCNKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEVLAITNAANTECIGTVDKDCHEREGHEAYEVHSASHGGLVGAGGARMGMSHNEALMGGQAHSTTPHLTMSHGQLSPGPGSQYRSLLPTSSDHEQQHYSSGGGETRPSVIESNQPLIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01221988;
90% Identity
iTF_00843861;
80% Identity
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