Basic Information

Gene Symbol
nfxl1_1
Assembly
GCA_963693315.1
Location
OY856186.1:230033077-230040319[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1 5.4e+04 -3.2 1.4 14 19 185 190 185 190 0.86
2 25 0.18 9.5e+03 -0.8 0.8 4 10 221 227 220 227 0.95
3 25 8.6e-08 0.0044 19.4 17.3 1 19 235 252 235 252 0.99
4 25 2 1e+05 -4.3 1.6 5 10 277 282 277 282 0.93
5 25 0.00012 6.2 9.4 11.3 1 18 288 306 288 307 0.92
6 25 0.33 1.7e+04 -1.6 0.8 5 10 331 336 331 340 0.94
7 25 0.0003 15 8.1 13.7 3 19 344 360 336 360 0.87
8 25 3e-05 1.6 11.3 14.7 1 19 395 413 395 413 0.92
9 25 0.81 4.2e+04 -2.9 0.4 1 5 422 426 422 431 0.73
10 25 2 1e+05 -4.4 1.7 5 10 436 441 436 441 0.92
11 25 0.00021 11 8.6 17.7 3 18 449 464 447 465 0.91
12 25 2.6e-09 0.00014 24.3 12.4 1 18 474 491 474 492 0.97
13 25 0.049 2.5e+03 1.0 3.5 10 18 539 547 536 548 0.94
14 25 0.012 6.2e+02 3.0 1.3 5 12 546 553 546 555 0.87
15 25 0.079 4.1e+03 0.4 6.9 3 12 561 570 560 570 0.90
16 25 0.4 2.1e+04 -1.9 0.9 6 10 631 635 630 635 0.90
17 25 7.3e-06 0.38 13.3 5.8 1 12 641 652 641 652 0.97
18 25 2 1e+05 -5.3 2.0 15 19 665 669 665 669 0.82
19 25 0.0015 78 5.9 14.7 3 19 681 697 680 697 0.94
20 25 0.43 2.2e+04 -2.0 1.4 9 15 739 745 737 746 0.89
21 25 1.2e-06 0.064 15.7 11.6 1 16 751 765 751 771 0.90
22 25 2 1e+05 -4.1 1.1 5 10 800 805 800 806 0.89
23 25 0.43 2.2e+04 -2.0 1.4 9 15 889 895 887 896 0.89
24 25 1.2e-06 0.064 15.7 11.6 1 16 901 915 901 921 0.90
25 25 2 1e+05 -4.1 1.1 5 10 950 955 950 956 0.89

Sequence Information

Coding Sequence
ATGAATAAACGTGAAAAGACATTACAAAATAACCCATGGGGAACGAAAAATAACGTGAAACAAAATGAACCACAACAGAAAGTGAAAAAACCAAAAGTACCACCAACTAAATTAGAAAGCGGAAAGGATCATGTTAAAAATCATGAAGCCCGATTTAAAGAAGTTCGAGTACAACATTTAGATGCCGCTAAAAAATTAGCTGAAAACTATGAATCTAGTTCGGATGAAGAGGAGCTTACATCTGGTGAACAAATACTTGAAACCGTTTTCAAAAGCTATACAGGACAAACAGCGGATCTCATCAAAACTCAACAGTTTTTAGAGAATATATTTCAATCTGGAACTGCAACATGCTTGATTTGTATCGGAAGTGTTAAACGAGCTGATGAGATTTGGTCgtgtgaaaaatgttttacattttttcatcTTCAATGCGTTCAACGTTGGGCAAACGATAGTATTTCGCAGAAACAAATCGCAACCGGAACGGAACAAggttattataataatttggGAGTTTATGTcccgaaaaaaataaaaccgatCGTATGGGATTGTCCGAAATGTCGAGCTACGTATTCGCCGGATGTGATTCCTCGGCATTATACATGTTTTTGTGGGAAGGAAGAAAACCCACAACTTCATCCCTGGCATATTCCACATTCATGCGGTGAAACTTGTCAAAAAAAGTTACAACCAGAATGTGGACATAAATGTGTGTTATTGTGTCATCCAGGACCATGTCCTCCATGCCCACAAATAATATCGTTATCATGCAAATGTGGAGAATCGAATCCAAAAGCGATTCGATGCACACAAAAATCATGGACGTGTGCCAAGAAATGCGTTAAAAAACTTGCATGTGGGATTCATGAGTGTGGTTTGGTTTGTCATTCAAAGAACGTATGTCCTCCGTGTAACAAACGAAGTGTTCAGAAATGTGTGTGTGGAGGAAGTTCAGAGGAGAAAAATTGTTCTCAATCTATATGGAAATGTAAAAAAGTTTGTGGAAAATTACATTCATGTCGATTGCATAAATGTGAGAAAGTCTGCCATGCAAATGAATGTGGAGATTGTCCATTTGGGGAACCGAGATCTTGTCCATGCGGAAAACAACTTACCGTCGCTCCTTGTTCGGAACAGGTAGAGTCATGTGGAGACACATGCTTTAAACTTTTACCTTGTGAAATTCACCATTGTGCTCAAAGATGTCATAAGGGAGACTGTGGTCAGTGTTCAGAACTTACCGAAAAAAAATGTCGATGTGGACTTCATTCAAAAGAACTTCCCTGTTCCAAACTTTATACATGCGAAGTCAAATGTAAACGAATTCGTGAATGTAAAAAACATCCATGTAATCGAAAATGTTGTGAGGGTCAATGTCCACCATGCGATAAAATTTGTGGAAAAACGTTATCGTGTTCCAAGCATAAATGTCAATCGTTGTGTCACAATGGTCCATGTTATCCATGTAACCAAAAATCTCAAATCAAATGTCGTTGCAGTAACACCGTAAAAGTTGTTCCGTGTGGTCGTGAAAGAAAATCAGCGCCACCCAAATGCATGCTTCCATGTAAAATTCCATCGAAATGTCATCATGAAAATCCTCATCATTGTCACCAAAACGAATGTCCTACATGTATACAAAAATGCCATTTACAGAACGACACAACAAATTGTCAACATTTATGTGAAGAACGTTGTCATGATGCAGTCCGAGTTCTGGTGTCTGATAAAAATTTCAAACCAGCATTACCTTGGGAGTTTCAAATTGAAACTTACGAAATTCAGAAACTCCCTCATCCAGAATGTAATATAAAAGTTTCGGTTGTTTGCCTCGGCGGACATGAAAAATGTTTATGGCCATGTTGGAATTCGAAACCGACTTCATGTCAAAGATTGTGCAGCAGAAATCTTAAATGTGGGAATCATAAATGTCAACTTATGTGTCATTCTGTTACAAATTTGAACTCTGTTGATGAAGAGGAAACATGTCTACCATGTCAGGAAGGATGTCAATTTAAACGAGCGGATGGCTGTATTCATTCTTGTAAAAAACCTTGTCATCTACCGCCATGTTCTCCTTGCACTATCAATGTGAAAACACAATGTCATTGTGGATTGTCACAGGTTTATTACAAATGCGGAGATTTCAACCGAGCAATCGAGTCGCAAGACGATGGAAAAACATTAGAAGAAGAAAAGGAAAAACTGCTATGCTGTGGTGGACGGTGTATAAAAAATTATCCTTGCGGACATCAATGTAAGTCCTTATGTCACTCTGGAAAATGTCCGAATTCCGATGATTGTAAGAAGAAAGTTAAACAAACTTGCCcatgcaaaaattataaaattgatgTTTCTTGTGATAAAATAAGAAATGAGGGCTTCACTTTAAAATGCAATGAATCATGTGaacaaaagaaaaaggaaaTAAAAGAACTGGCAAAGAAAAAAGAATTAGATATTGCAAAACAAGAAGAGGAAAGAAATCGAATTGAATTAGAagaatttgaaagaaaatatggAAAGAAGAAATCACGACCACGGAAGAAGGGCGAACACGTTGTTCTAAATGTAATCGATACAGTATCGAAactaaatcgaaacatgtttcgacATGTTTTCGATGGAAAAACATTAGAAGAAGAAAAGGAAAAACTGCTATGCTGTGGTGGACGGTGTATAAAAAATTATCCTTGCGGACATCAATGTAAGTCCTTATGTCACTCTGGAAAATGTCCGAATTCCGATGATTGTAAGAAGAAAGTTAAACAAACTTGCCcatgcaaaaattataaaattgatgTTTCTTGTGATAAAATAAGAAATGAGGGCTTCACTTTAAAATGCAATGAATCATGTGaacaaaagaaaaaggaaaTAAAAGAACTGGCAAAGAAAAAAGAATTAGATATTGCAAAACAAGAAGAAGAAAGAAATCGAATTGAATTAGAagaatttgaaagaaaatatggAAAGAAGAAATCACGACCACGGAAGAAGGTTATCGTTGAcgaaacaaataataataatttacgTAAATACGGTTTGATTATTGGTGCAGGATTAATATTAATCTCTggtgtagtttatttttttgtatttaaaaatttaacttaa
Protein Sequence
MNKREKTLQNNPWGTKNNVKQNEPQQKVKKPKVPPTKLESGKDHVKNHEARFKEVRVQHLDAAKKLAENYESSSDEEELTSGEQILETVFKSYTGQTADLIKTQQFLENIFQSGTATCLICIGSVKRADEIWSCEKCFTFFHLQCVQRWANDSISQKQIATGTEQGYYNNLGVYVPKKIKPIVWDCPKCRATYSPDVIPRHYTCFCGKEENPQLHPWHIPHSCGETCQKKLQPECGHKCVLLCHPGPCPPCPQIISLSCKCGESNPKAIRCTQKSWTCAKKCVKKLACGIHECGLVCHSKNVCPPCNKRSVQKCVCGGSSEEKNCSQSIWKCKKVCGKLHSCRLHKCEKVCHANECGDCPFGEPRSCPCGKQLTVAPCSEQVESCGDTCFKLLPCEIHHCAQRCHKGDCGQCSELTEKKCRCGLHSKELPCSKLYTCEVKCKRIRECKKHPCNRKCCEGQCPPCDKICGKTLSCSKHKCQSLCHNGPCYPCNQKSQIKCRCSNTVKVVPCGRERKSAPPKCMLPCKIPSKCHHENPHHCHQNECPTCIQKCHLQNDTTNCQHLCEERCHDAVRVLVSDKNFKPALPWEFQIETYEIQKLPHPECNIKVSVVCLGGHEKCLWPCWNSKPTSCQRLCSRNLKCGNHKCQLMCHSVTNLNSVDEEETCLPCQEGCQFKRADGCIHSCKKPCHLPPCSPCTINVKTQCHCGLSQVYYKCGDFNRAIESQDDGKTLEEEKEKLLCCGGRCIKNYPCGHQCKSLCHSGKCPNSDDCKKKVKQTCPCKNYKIDVSCDKIRNEGFTLKCNESCEQKKKEIKELAKKKELDIAKQEEERNRIELEEFERKYGKKKSRPRKKGEHVVLNVIDTVSKLNRNMFRHVFDGKTLEEEKEKLLCCGGRCIKNYPCGHQCKSLCHSGKCPNSDDCKKKVKQTCPCKNYKIDVSCDKIRNEGFTLKCNESCEQKKKEIKELAKKKELDIAKQEEERNRIELEEFERKYGKKKSRPRKKVIVDETNNNNLRKYGLIIGAGLILISGVVYFFVFKNLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-