Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856186.1:111833010-111834326[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.15 32 7.7 3.3 2 23 197 219 197 219 0.97

2 6 0.0029 0.58 13.1 0.5 2 20 234 252 233 254 0.94

3 6 0.0024 0.48 13.4 0.2 2 23 295 317 295 317 0.95

4 6 0.65 1.3e+02 5.7 1.0 2 23 332 352 331 352 0.93

5 6 3.4e-06 0.00069 22.3 0.6 3 23 362 382 361 382 0.98

6 6 1.1 2.1e+02 5.0 1.5 1 14 388 401 388 402 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.15	32	7.7	3.3	2	23	197	219	197	219	0.97
2	6	0.0029	0.58	13.1	0.5	2	20	234	252	233	254	0.94
3	6	0.0024	0.48	13.4	0.2	2	23	295	317	295	317	0.95
4	6	0.65	1.3e+02	5.7	1.0	2	23	332	352	331	352	0.93
5	6	3.4e-06	0.00069	22.3	0.6	3	23	362	382	361	382	0.98
6	6	1.1	2.1e+02	5.0	1.5	1	14	388	401	388	402	0.90

Sequence Information

Coding Sequence: ATGAATGAGCTTTGTAGAACGTGTTTATCACAAAGTAATGAATTGATATCAATTTACGTAATTGCATCATTAGATGGTCAAATTAAGAAGATGATATCGCTTTGTATAGGATTGGAGcTATCTAAATTGGACAACTTTTCGAACAATATCTGTATAGTATGTTTTAATAAGTTATTAGACGCTTATAAATTTCGGCTTATGTGCTGGAAATCGAACGAATACCTTATCAAAAAGTCGTTTGAAAAACTTCAGCCAGTATTACACGACAGTGAAATAATTGATCTTACAGAAGATGAGAAACCTCCAGCAGAATTACATGAAAATGAATTAGTCGATCACATCGAAGAAGATTTACCTAAACCAGAAAAAGTACCTGAAAAGCTTAAATGCCTGAATAGTTTAAAACCCAGCCATTGTGAAGAGAAACCTCCAGCAGAattacatgaaagtgaattAGTCGATCACACCCAAGAAGATTTACCTGCACCAAAAAAAGTGCCTGAAAAGCTAATATGCCTGAATAGATTAAAACGCAGCCattgtaattataaaataaaagaccAAAACTACCATCGGATTACTAGACGTCAATGCTACTTATGTTCTGAGAGGTTCTTCACTTTACCTACTCTAAAAGAACATTTTCGTAGCTGCCATAAAGCTATTTATAACGAAGAACTTGTTCCAGCAGAAGAAAAAacatgtaaaatttgtaatcaGCTATTTAAAACAGTCTACGGTCTTCGCAAACATATAACAAATCTTACATTTCTAGAAAAACAACGTTCTTTTCCCAATTCTTTATTGAATCAAAACCTGCAAAAGAGAAAACTTATAAGTCgcaaaaatgaaacaaaatctGGAATTCGAATTAAAACACGTAAATGCTATTTATGTACGGAAACTTTTGTTCAGTTGCCTCAActtataaaacatttatatattgTTCATAAAATTGAATATAACGAAGAAGATATTCCAGTACAAGCAAAAACCTGCAAGATTTGTAAAAAACAAGTACCTTTCAAAGCCCTCATCTACCACCTTAAAACGCATCGTCGTTATCCAAGAACCCCAGAAATTTGCGAATATTGTGGACTAAAATACAAAACCCGTCAAAATTTAGCTATACATATGCGAAAACATACGGgggaaaaaattttcaaatgtgaTAAATGTGATTTTAGTACCGTTCACCCTTCATCCGGCAAAGTTGGTTAtcttaaatatttgattaatatattattgtga
Protein Sequence: MNELCRTCLSQSNELISIYVIASLDGQIKKMISLCIGLELSKLDNFSNNICIVCFNKLLDAYKFRLMCWKSNEYLIKKSFEKLQPVLHDSEIIDLTEDEKPPAELHENELVDHIEEDLPKPEKVPEKLKCLNSLKPSHCEEKPPAELHESELVDHTQEDLPAPKKVPEKLICLNRLKRSHCNYKIKDQNYHRITRRQCYLCSERFFTLPTLKEHFRSCHKAIYNEELVPAEEKTCKICNQLFKTVYGLRKHITNLTFLEKQRSFPNSLLNQNLQKRKLISRKNETKSGIRIKTRKCYLCTETFVQLPQLIKHLYIVHKIEYNEEDIPVQAKTCKICKKQVPFKALIYHLKTHRRYPRTPEICEYCGLKYKTRQNLAIHMRKHTGEKIFKCDKCDFSTVHPSSGKVGYLKYLINILL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00456798;
90% Identity: -
80% Identity: -