Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856188.1:223228717-223230131[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.033 6.7 9.8 5.2 3 23 160 181 159 181 0.90

2 8 0.00012 0.024 17.5 1.0 2 23 196 217 195 217 0.97

3 8 1.4e-06 0.00029 23.5 0.3 3 23 225 245 223 245 0.97

4 8 2.9e-06 0.00058 22.6 1.6 1 23 251 273 251 273 0.99

5 8 3.1e-05 0.0063 19.3 5.2 1 23 279 301 279 301 0.98

6 8 9e-05 0.018 17.8 3.7 1 23 307 329 307 329 0.97

7 8 3.3e-05 0.0068 19.2 1.5 2 23 336 357 335 357 0.96

8 8 0.0091 1.9 11.5 5.5 1 23 363 385 363 386 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.033	6.7	9.8	5.2	3	23	160	181	159	181	0.90
2	8	0.00012	0.024	17.5	1.0	2	23	196	217	195	217	0.97
3	8	1.4e-06	0.00029	23.5	0.3	3	23	225	245	223	245	0.97
4	8	2.9e-06	0.00058	22.6	1.6	1	23	251	273	251	273	0.99
5	8	3.1e-05	0.0063	19.3	5.2	1	23	279	301	279	301	0.98
6	8	9e-05	0.018	17.8	3.7	1	23	307	329	307	329	0.97
7	8	3.3e-05	0.0068	19.2	1.5	2	23	336	357	335	357	0.96
8	8	0.0091	1.9	11.5	5.5	1	23	363	385	363	386	0.94

Sequence Information

Coding Sequence: atgaataagATATGCCGAACCTGTTTATCACAAGCATTAGAATTAATATCAATTTCCAAAGTAAAATGTTTTGATGTGCAAATTGTCAGGGCTATATCGCTGTGTACTGGCTTAGAGatatcTAAATGTGATGAATTTTctaatgaaatttgtaatacctgcattaaaaaattacttgacGCATACAAATTTCGTCAAATATGCTGGAAATCAAACGATTACTTCATCAAGAAATACactgtaataaataaattaccacGGGTTCCAAACGGTAGTGAGGAAGATCATATCAACCGAAAAGATTTATCTAAGCCTAAACCACATATTAGCGGTACATGTGTCAATATAATAGAACCGGAACGTGTAGTAGAATCTGTGCctgaaaaaaatatatcaaagtCATTAGAAGCATGCATAAGTACAGGAATTTATGATAATGCTTTAGTAAGAGCAAGTACTTATTTCAGAAATCGTCACTGTTATAAATGTCCACGAAAATTTTATTCTATGTACCATCTTAAACATCATTTAGTTGAAGCTCATAGAATTATTTATAATGAAACCGATATACCACCAGAAGCAAAAACATGTAAGATTTGTGACAAACAATTATCTACATTTGAGTCTCTCCTTAAGCATATAAGAGGTCATACTAATAAACAACCTAGTATATGTGATTTCTGTGGAATGACATTTAAAAGTGCGCCCAATTTAATCAAGCATATTCGACGACACACAGGTGAAAAACCTTATAAATGTCAGGAATGTGATTACCGTTCCATACAGAAGACCTCACTTACAGTTCACATGCGAACTCATACGAAGGAACGAAAATTTGTTTGCCCTATTTGTCATAAAGCTTTTATTACTTCAAGCCACAGACTTTCGCATATGCATACCCATAATGATGCAAGACCATTTGCTTGTATGGTTTGTCAAAAGGCATTTAAGCGCAAAACATGCTATAAAAAGCATATGATTATTCATGAtgacacaaaaaaattaatttgcacCTATTGTGATAGAAAATTTGCgaaaatgtataatttaaaaagcCATTTAAAACAGCATACCGGTGAAAGACCTCATTGTTGTGAAGTTTGCGGCAAACTTTTTATTCAAATTACTTCTTGGAGAACGCATATGAAAAACCACCATGAAAAAGTTGTATAG
Protein Sequence: MNKICRTCLSQALELISISKVKCFDVQIVRAISLCTGLEISKCDEFSNEICNTCIKKLLDAYKFRQICWKSNDYFIKKYTVINKLPRVPNGSEEDHINRKDLSKPKPHISGTCVNIIEPERVVESVPEKNISKSLEACISTGIYDNALVRASTYFRNRHCYKCPRKFYSMYHLKHHLVEAHRIIYNETDIPPEAKTCKICDKQLSTFESLLKHIRGHTNKQPSICDFCGMTFKSAPNLIKHIRRHTGEKPYKCQECDYRSIQKTSLTVHMRTHTKERKFVCPICHKAFITSSHRLSHMHTHNDARPFACMVCQKAFKRKTCYKKHMIIHDDTKKLICTYCDRKFAKMYNLKSHLKQHTGERPHCCEVCGKLFIQITSWRTHMKNHHEKVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00456577;
90% Identity: iTF_00456577;
80% Identity: -