Dgla015519.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- ZNF236_1
- Assembly
- GCA_963693315.1
- Location
- OY856186.1:73576366-73591995[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6e-05 0.0032 20.2 1.5 1 23 167 190 167 190 0.97 2 13 0.01 2 11.4 1.1 1 23 200 223 200 223 0.93 3 13 2.6e-07 5.3e-05 25.8 1.2 2 23 332 353 331 353 0.97 4 13 0.0033 0.68 12.9 1.3 1 23 359 381 359 381 0.98 5 13 1.2 2.5e+02 4.9 1.4 1 12 388 399 388 411 0.80 6 13 5 1e+03 2.9 4.7 1 23 507 529 507 529 0.95 7 13 1.6e-05 0.0034 20.2 4.0 1 23 535 557 535 557 0.97 8 13 0.079 16 8.6 1.0 3 23 565 585 563 585 0.95 9 13 0.00078 0.16 14.9 3.6 1 23 591 613 591 613 0.98 10 13 0.00048 0.098 15.6 4.1 3 23 745 765 744 765 0.98 11 13 0.00043 0.088 15.7 1.2 1 23 771 793 771 793 0.98 12 13 0.0023 0.46 13.4 1.6 1 23 800 822 800 822 0.98 13 13 0.011 2.3 11.2 1.4 1 23 828 850 828 850 0.95
Sequence Information
- Coding Sequence
- atGGATGTTTCATGTTCCCTTATAAAATTAGACGAAAATTGCGTTTTTACCGATGGcaattacatttatatatattctCACGATAATTTATCAAATAACAATTCTAACAATAATTTATCCTACGAAATAATAAAtaatttaaatttagaggAAAATTTACAAGAGCAACAACAAGAAAGTAATTCATCTATTTGCGATCAACAAGTTATTCAAATAACGGAAATTCAAAATACACTTGTTGATTGTCCTGATTTTATATATGATCAGCAAAATAAAGACTTATTTACCATTTGCAACTTTGACAATGGAGCTACAAACTATGAAGTGACCAATAAAGATATATCTCGAAATGAAGTAAATTTTGAAAGTAACATAAATGAAACAGAATATCCTATCAATGAAATTATAGTACAAAACCAGAACATCAGGGAAATAGTTGACAATGAAACAAAAAGTTCATTAGGAATTCATTTATTGCGGCATACGGGAAAGAAGCCTTATATGTGTCCacattgttttttaaagtttgcGCAAAAAgGTAACCTAAAAATCCATATTCAACGATTACATGAAAAATCAAGTCAAAATGAAACATCGTATCCATGCTTACAATGCACATGTGTATTTCGAACCCTTGGACCACTAAATCGTCATATAACTGATTTCCATAGTAAGATAAAAACGAACAGTAGGAATTATGGGCGTAAAGCaatattaaaaaagcaaaatGAAAAGACAAACAATGAAATAGAAAACGACGAAAtagattttaaacaaattatgtcacaattaaatgaaattaaacaaacatcaataattaaagaaatttccAACAATAATGAGATTAACAAACCTAATGAAAATGAATCAAGCAGCCATACAACTGACaatcaaattaataatataattgaaTTAGCTGATCGAAAGGAAAATGGAACCATTGTCCATCAAAAAGCAGAActtattttagataaaaatgGAAAACGTCGTGTTAGTTGtttatattgtaaaaaaaaatttactcgTCCATCGGATCTATTGCGACATATTCGAACGCATACACGTGATAAACCATTTGAATGTGTTTTATGCAAAAAAAGATTTGCTTTAAAAACAGCACTAAGCACGCATTCTAAAACTCAcgaaaataaaagaagaaaattttcgtgttatatttgtaataaaaactTCAGAGAATTGTTAACATTAGATTGTCACGTTAAAGAATTACATTCCACAAATGACATGGCGTTCCAATGTTATCCCTGTAAAAAGAGGTACTTTAATGCTGATGAGCTATTGTGTCATTCTAAAGATCATAAAAAAGAAATTCGTACTAAAAGAAGAAAAATCATtaaagaaacaacaaaaaaacttaacttatcGTCATTGTTCCCATCAAATCAAATAATTGCACTAAGAGAACCGTTAGTTTTGATGGAAAACGGTGATGTGATTGAAACAATTAACAGAAAATCAAATATCAGCTCAAACGAAAACAATACGAGTCGTCGTCCTCATATATGCTATTTATGTAATATAGGATTTCTAAAATCATGTCATTTAAAACAACATATTCTGGGTCATACAGGTGTTCGTCCTCATAAATGTAAATATTGTGATAAATCATTCCAATCaaaaaattcacttaaaatCCATGTTCGTGGTCATCTCGGTGAAAAACCGTATGGATGCTTATTATGtagtaataaatttgtttcgAAACAAATGCTAAACCGACATAAAATATCACATTCAAATGAACGTAATTTTATATGTCCGTATTGTCCGAAACGATTTAAAAGTACAGTTGACTGTCGTAAACATATCAAAAGACACAAAAACGATTTGATTAATGAACTAGAACAAAGCAATGAAATTATAAATCCAAATGAGTTGTGTGCACTACAGCAAGCACAATATCCAAATGagataaattcaaatttatatttctcTAATATTGATGATAgtcaaattcaatttatttctaTTGAAAACAATGAGGAAAATATCAATTCATTGATTTGtgttaatgaaaatataaatgaaCTTCCTGTTGCAAATGAAATGAATAGCTACAATTTATTAATTCCGGTTCCTaatgaaaatgaagaaaatattcATTTAGAGGAACCATTTTCAAACCAATATGAAAATGTAGATAAAACTTCAACTTCTGCAGGTTTTCTAGATAATAATAATACGACAACAGAAGTACCATCTGATCGTCATTGTAAATATTGTCAACGGTATTTCAAAAAGCCTATTGATTTGAGACGTCATGAGCGAACACATACTGGTGAAAGGCCGTTTGAAtgtgaaaaatgtaaaaaaacttTTGCACTCGGGTCAACTTTGAAGCTGCACGAAAAAACGCATATGGagttgaaagaaaaattttcatgtcatgTTTGTTCAAATGAGTTTTTATCAAAAGGAAGCTTAAAAGTGCATATGAGGATACATACAGGAGATAGACCATATAAATGTCAATATTGTGTGAGAACTTTTCGAACtattggaaataaaaatgtGCATGAAAGTAATCATGTTAAAATTGCAATTCAAAAAGGAATCGATCCAAAAGGTTAG
- Protein Sequence
- MDVSCSLIKLDENCVFTDGNYIYIYSHDNLSNNNSNNNLSYEIINNLNLEENLQEQQQESNSSICDQQVIQITEIQNTLVDCPDFIYDQQNKDLFTICNFDNGATNYEVTNKDISRNEVNFESNINETEYPINEIIVQNQNIREIVDNETKSSLGIHLLRHTGKKPYMCPHCFLKFAQKGNLKIHIQRLHEKSSQNETSYPCLQCTCVFRTLGPLNRHITDFHSKIKTNSRNYGRKAILKKQNEKTNNEIENDEIDFKQIMSQLNEIKQTSIIKEISNNNEINKPNENESSSHTTDNQINNIIELADRKENGTIVHQKAELILDKNGKRRVSCLYCKKKFTRPSDLLRHIRTHTRDKPFECVLCKKRFALKTALSTHSKTHENKRRKFSCYICNKNFRELLTLDCHVKELHSTNDMAFQCYPCKKRYFNADELLCHSKDHKKEIRTKRRKIIKETTKKLNLSSLFPSNQIIALREPLVLMENGDVIETINRKSNISSNENNTSRRPHICYLCNIGFLKSCHLKQHILGHTGVRPHKCKYCDKSFQSKNSLKIHVRGHLGEKPYGCLLCSNKFVSKQMLNRHKISHSNERNFICPYCPKRFKSTVDCRKHIKRHKNDLINELEQSNEIINPNELCALQQAQYPNEINSNLYFSNIDDSQIQFISIENNEENINSLICVNENINELPVANEMNSYNLLIPVPNENEENIHLEEPFSNQYENVDKTSTSAGFLDNNNTTTEVPSDRHCKYCQRYFKKPIDLRRHERTHTGERPFECEKCKKTFALGSTLKLHEKTHMELKEKFSCHVCSNEFLSKGSLKVHMRIHTGDRPYKCQYCVRTFRTIGNKNVHESNHVKIAIQKGIDPKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -