Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856187.1:404129195-404131006[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00038 0.077 15.9 6.2 2 23 240 261 239 261 0.96

2 9 1.1e-06 0.00023 23.8 0.8 1 23 267 289 267 289 0.98

3 9 6.8e-07 0.00014 24.5 3.8 3 23 301 321 299 321 0.95

4 9 2.4e-05 0.0048 19.7 1.1 1 23 326 348 326 348 0.96

5 9 0.00029 0.06 16.2 1.7 1 23 354 376 354 376 0.98

6 9 0.00019 0.039 16.8 0.3 2 23 382 403 381 403 0.96

7 9 0.011 2.2 11.3 3.2 1 23 409 432 409 432 0.98

8 9 0.0011 0.22 14.5 5.7 1 23 437 459 437 459 0.97

9 9 0.00012 0.025 17.4 3.2 1 23 465 488 465 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00038	0.077	15.9	6.2	2	23	240	261	239	261	0.96
2	9	1.1e-06	0.00023	23.8	0.8	1	23	267	289	267	289	0.98
3	9	6.8e-07	0.00014	24.5	3.8	3	23	301	321	299	321	0.95
4	9	2.4e-05	0.0048	19.7	1.1	1	23	326	348	326	348	0.96
5	9	0.00029	0.06	16.2	1.7	1	23	354	376	354	376	0.98
6	9	0.00019	0.039	16.8	0.3	2	23	382	403	381	403	0.96
7	9	0.011	2.2	11.3	3.2	1	23	409	432	409	432	0.98
8	9	0.0011	0.22	14.5	5.7	1	23	437	459	437	459	0.97
9	9	0.00012	0.025	17.4	3.2	1	23	465	488	465	488	0.97

Sequence Information

Coding Sequence: atgacAAGTATAATGAATTTATGTCGATGTTGTATGTCGGATAACACAGACGATGTGGATATATTTTGTAGTGTTGATCCAGAATTTCATTTAGTTATATCGGAAGTTTTCCAAAAGTGTACGCTATTAGAAATAAACGAAGAAGATAAAATGCCATCATTTATATGTTTTGATTGTTTGGATAATTTACGAAAATGTTATAGATTCATTCAACAATGTAAAAATTCGGATTTAGAATTGAGATTGCAAATCATATGTAATGATGAAAACCAGGACGCAGATAAATCGAACGTTACCGCTTCAAATTATTACGAGCAAATCGATCTACTACATGATTCATCTAGGTTTCAGATATGTGGGATCAAAACCGAAAAATCGTGTAAACTGGAATTCGGAAAtgatttaaatacaaaaattgatCAACCTATGTTCGTCATTGACGAGCTGTCGGAAGGTAACAATGTAAATAATAACAACGTACCTTCAACACAAGAAGCAATTAATATAGATGAAGATAATATAGTAGAAGAATTACCGTCACAATCTGACCAAGAGGAAGAAAGTTTGCCTTTTGATGAAGAACTGACACAAATCAAATCCGAAAATGACACAATTACCAATGCAAACACAGATTTGGATGATGTTTCTTCAGAGGATTTAGAATTTAAGAAGAtGCTAGAAATttcacagaaaaaaaaacttaaaagcaTTCGTTGTAAATGTGAGTTTTGTGGGAAAGAATTTCACACAAAATTTAGTTTAACAATTCATAGAAGAATTCATTTGGGAATAAAACCGTATAGTTGTCAAGTTTGCGGTAAATCATTTACAAGTAACGGAAATTATTCTgcacataaaaaaattcatataaaagATTATAAACGACAAAGAAATCATTTATGTTCGCATTGTGGCAAAAGATTTTCAACATCATCGAATTTAACTGCTCATCTTTCTGTTCATGAAAATTCGACATTTCAATGCGATATTTGTAGTAAATCATACGTATCACAAAAATCTTTAAGAAACCATAAATTAGCTCATCTTGGTGGTACGCCATTTGAATGTAAGACTtgtaaagaaaaatttgctACTTATTCACTTTTAGCAACTCATAAATTGAAgcattcaaataaaaatctcGAATGTGAATGGTGTCAAAAGTCCTTCAGTCGTTTTACTGCTTTGGTAGCGCATAACAGATTACACACTGGTGATAAACCTTTCAAATGTCATTTATGCTCAAATCGttatgtacaaaaaaatcgtttaaatgAGCATATAAAAATTACACATTCAGATTATAGATATCAATGTAAGCTTTGTAACAAACAATATAGCCATAAGCAAACATTCGAACGTCATGTGTATTCACATTCCCCAGATCAACCGTTTAAATGTACTGAATGCGCGTTTTCATTTGTCAGGAAAGATAGGTTGCGGCATCATATGCTAAAAGTGCATAAAAAAGTATTGGCAGTGGTTTACGATCCATCCGTGATTGAATACCAAGAAACAGACGAGTATGCCATTGAAATAATTGCCGAAAATAATGATGAAGAGTGCAAAAATATCATTGTTGTTGactaa
Protein Sequence: MTSIMNLCRCCMSDNTDDVDIFCSVDPEFHLVISEVFQKCTLLEINEEDKMPSFICFDCLDNLRKCYRFIQQCKNSDLELRLQIICNDENQDADKSNVTASNYYEQIDLLHDSSRFQICGIKTEKSCKLEFGNDLNTKIDQPMFVIDELSEGNNVNNNNVPSTQEAINIDEDNIVEELPSQSDQEEESLPFDEELTQIKSENDTITNANTDLDDVSSEDLEFKKMLEISQKKKLKSIRCKCEFCGKEFHTKFSLTIHRRIHLGIKPYSCQVCGKSFTSNGNYSAHKKIHIKDYKRQRNHLCSHCGKRFSTSSNLTAHLSVHENSTFQCDICSKSYVSQKSLRNHKLAHLGGTPFECKTCKEKFATYSLLATHKLKHSNKNLECEWCQKSFSRFTALVAHNRLHTGDKPFKCHLCSNRYVQKNRLNEHIKITHSDYRYQCKLCNKQYSHKQTFERHVYSHSPDQPFKCTECAFSFVRKDRLRHHMLKVHKKVLAVVYDPSVIEYQETDEYAIEIIAENNDEECKNIIVVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -