Dgla080066.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:108757812-108784013[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.55 1.1e+02 5.9 1.4 2 19 172 189 171 194 0.95 2 12 2.2e-06 0.00044 22.9 2.4 1 23 213 235 213 235 0.99 3 12 1.1e-05 0.0023 20.7 2.6 1 23 241 264 241 264 0.98 4 12 0.0011 0.22 14.4 7.0 1 21 278 298 278 300 0.95 5 12 0.0011 0.22 14.4 1.2 1 19 306 324 306 329 0.97 6 12 0.00055 0.11 15.4 2.1 1 23 368 389 368 389 0.98 7 12 0.0043 0.88 12.6 2.8 1 23 402 423 402 423 0.89 8 12 0.016 3.3 10.8 0.8 1 23 428 452 428 452 0.93 9 12 0.00037 0.076 15.9 1.7 1 23 458 481 458 481 0.95 10 12 0.0036 0.74 12.8 0.7 1 19 488 506 488 508 0.90 11 12 0.003 0.61 13.1 0.2 1 23 529 551 529 551 0.93 12 12 0.0016 0.33 13.9 2.1 1 23 556 578 556 578 0.98
Sequence Information
- Coding Sequence
- ATGTTAGAAACTACTTTGAATGACCTTAACGACGGAAACACCCACGAACATTCAGGATCGAAGATTATGTCAGCTCCAAATACAGAAAAGAAagatcaaaacaatttaatcGAGAATCTGAATTTTATGCACAATAATACAAAAATCGAGGCGATTGACCAAACTGAAACACTAACgAACATATTAGTTACTAGTACTGCAAGCACAATAAAGGAAGAACAGAATAATTCAACTGATAATAAGCAATTTATGGacgaaaacataaaaatcaagGAGAGTGACATAAATGATGTTCATCCTGCTGAAAATATTTCAACCGATAAAAGTATGGCAACGGAAACATTATCAAAACCTACTTTAGATCATCTTAAGGACATAAATTCATCAAAATCTTGTGGTTGTCTTATACGATATCTATATAAAGGAGCATTGGTATTACATAATTGTATTCACTATAAATCAGGACCAAGGgatCCAAAGCACGTTATTTATCATACAGAAGAAAAACCAAATCAATGTCTAAAATGCAACAGATGGTTTCGTTTTTCAACAAGTTTGAAAAAGCATGATTTACAAATACATCAACAGTACGGTGCACAATTGGTTAAAAAGCCCGTTATCAAATGGGAAAAGTATTACAAATGTAAATTCTGCAATAAAATGTTTAAGGCAAAAGCGTCCTTGATTAAACATATGAGACTTCATACAGGAGGAAAACCATACGAATGTTCGGAATGTCAAGAGAGATTTACACATAAAAATATGTTACTAGTACATATGAAAACAACCCATCCACGGgATTCAAACCACTATTCGGATCAACGGAAAAAATTTAAGTGTAGCTATTGTGAAAAGGAATTCAAGAGACGTAGTAACTTTGATCACCATATAATGTGTCATACAGGTGAAAAACCATATCAATGTTTAAAATGCCTTAAGAGATTTCGCcgtttagaaaatttgaaaagtcATGATTTTGTCATACATCAACGTAAAACACAAGAACATAAATTGGTAAAAAAACCCgtcaaaaaaagaaaacgagTAACCAAAAGAAAAACCGTAaccaaaaaaattcataaatcCAAACAATTAGAAAAGTACAAATGTAAGTTTTGTGATAAAATGTTTACGTTAAAAACCATGGAGATACATATGCGTGGGCATGAACGTGAGCAAAGACGCTATATTAAACGAATAAAACATAAATGTTCCGAATGTGAAGAGAAATTTACACGTAAAGGAATGTTACGACACATGAAAATCCATCCACAGaaacgATATTTCTGCACTTGGGAAAATTGCAATAAATCATTTAGAAATAAATACGGACCTGACCGGCACATGGCATCTCATTCCAATGAGTGGAATCACAAATGTCCTTCATGTGCTCGATCTTTTCCAACAAAAAAGGGGTTGAGACAGCATATTTTACAAAGGCATGACCCCCTCAAAGAAACTtttGAATGTCATCATTGCGGAATTACATTCAATACCAGAGAAGCCATCATTTACCATTTCGAATGGCTTAAGAGAAAAACAACAACAtCATCAAAACCAAATAATTCAAGTTCAGAAGGAATATTTGAGTGTGAAAATTGTAACAGAACATTTGCGTCAATCGTTTCTCTAGCAACACATAGTGCATACCATAAGAACAAATCATATGAATGTTCGCATTGTAATAAAAGATTTTCTGCTAAAATTGTTTTAGATTCACATTTAAAATCTcacgaaaaaaaatatataccgAAGaCAATAATAAAAACGTTTTGGAACCCGGAAAAGACAAGAACGCAACCAAAGAGGCAATGCAGGGATCCACATGAAGAAAAaattgCCGTTGAAGAAGTAACATCACCTGTTCTTAACGACTTTTTGGAGCCCACAATTTGTAAAGAAGAATTGATTTTACCCGATGAAAGCATTTGA
- Protein Sequence
- MLETTLNDLNDGNTHEHSGSKIMSAPNTEKKDQNNLIENLNFMHNNTKIEAIDQTETLTNILVTSTASTIKEEQNNSTDNKQFMDENIKIKESDINDVHPAENISTDKSMATETLSKPTLDHLKDINSSKSCGCLIRYLYKGALVLHNCIHYKSGPRDPKHVIYHTEEKPNQCLKCNRWFRFSTSLKKHDLQIHQQYGAQLVKKPVIKWEKYYKCKFCNKMFKAKASLIKHMRLHTGGKPYECSECQERFTHKNMLLVHMKTTHPRDSNHYSDQRKKFKCSYCEKEFKRRSNFDHHIMCHTGEKPYQCLKCLKRFRRLENLKSHDFVIHQRKTQEHKLVKKPVKKRKRVTKRKTVTKKIHKSKQLEKYKCKFCDKMFTLKTMEIHMRGHEREQRRYIKRIKHKCSECEEKFTRKGMLRHMKIHPQKRYFCTWENCNKSFRNKYGPDRHMASHSNEWNHKCPSCARSFPTKKGLRQHILQRHDPLKETFECHHCGITFNTREAIIYHFEWLKRKTTTSSKPNNSSSEGIFECENCNRTFASIVSLATHSAYHKNKSYECSHCNKRFSAKIVLDSHLKSHEKKYIPKTIIKTFWNPEKTRTQPKRQCRDPHEEKIAVEEVTSPVLNDFLEPTICKEELILPDESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -