Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856188.1:28341317-28355588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00033 0.068 16.1 2.6 1 23 328 350 328 350 0.97

2 8 1.1e-05 0.0023 20.7 1.1 1 23 356 378 356 378 0.98

3 8 8.7e-06 0.0018 21.0 1.6 1 23 385 407 385 407 0.98

4 8 0.00042 0.085 15.7 2.6 1 23 413 435 413 435 0.98

5 8 0.0017 0.35 13.8 0.5 2 23 443 464 442 464 0.96

6 8 2.2e-06 0.00044 22.9 1.2 1 23 470 492 470 492 0.99

7 8 0.0039 0.8 12.7 1.2 1 23 505 527 505 527 0.98

8 8 6.3e-08 1.3e-05 27.8 0.6 1 23 533 555 533 555 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00033	0.068	16.1	2.6	1	23	328	350	328	350	0.97
2	8	1.1e-05	0.0023	20.7	1.1	1	23	356	378	356	378	0.98
3	8	8.7e-06	0.0018	21.0	1.6	1	23	385	407	385	407	0.98
4	8	0.00042	0.085	15.7	2.6	1	23	413	435	413	435	0.98
5	8	0.0017	0.35	13.8	0.5	2	23	443	464	442	464	0.96
6	8	2.2e-06	0.00044	22.9	1.2	1	23	470	492	470	492	0.99
7	8	0.0039	0.8	12.7	1.2	1	23	505	527	505	527	0.98
8	8	6.3e-08	1.3e-05	27.8	0.6	1	23	533	555	533	555	0.99

Sequence Information

Coding Sequence: ATGTCGAAAGATTGTTCCAGCAAACAACGTGGTCCTCAGTGTTATAGTTGCATCGAATATGGGCATCTAGCTAATATATGTCagaaaaaaaacgataaaaatcCAAATGTATGTGCATCAGTTAGACAAGATCGGGATCGATATAACAAACGGATTGCTATTGACGGTTATGAGATAAATGGAGCGGTAACAACATCATTTAAAGGAGTTGGCTCAGGCACTATGTATACGATTGGCAGAATAACTTGTAACATGGTTAAAGATGGTGAGACATATCGGACAATCGTTAATGTTGCTGATGTTGCGTTCATGTTGCTGCCCTATGTGATTGTTGGGAACGAGTTGCTAGCACAAACTGAAACTGTGTTGAGACCGGATGGTATTAGTGTTCGGAAATTGGGATCTGAACTTCCTATTTATGCCATTGAAAAAGaggatgatttaaatttagatcACATTCAAGATCGTGCATTGACAGACAAGGTCCAGAAGATGATTATTGGCTATGACAGTCAAAAAGAAACGGTTGTGGTACAGAACCAAATTGAGGAATGGATGTCGGAAGAAATTGTTAGACCTAGTATCTCCAACTATGCCAGTCCTGTAGTTTTGACCAATAAGAAGGATGGCAAGAAAAGATTATGCGTGGACTACCGCAGGCTCAATAAAATCATTGTAAAGGATCGGTATCCACCGCCGATTGTAGATGAACGAATTGACCAGGTTCAAGATGCTCAATTGTATTGTACACTCGATTTACGTAATGGTTTCTTTCATGTACCTATACCTGAAGATTCGATCAAGTATACCACGTTCGTTACACCTTTTGGGCATCACGAGTTTTTGAGACCATCAAtagctaaaattaaaaaagaaatacatgAAATCGAAATTGAGGAATCTACAACTCCTGTTTATAATGCTGGAGAAAATAAGTTGGAATATGATGAGATCAGTATTAAAAGGacATCAGACAAGCGTCACGAATGTAACATTTGTAATAAACAATTTCCGTACACCTATCGGTTAAACCAACATATTCAAAGTCATTCAAACGAGAAACCATATGAATGTTCAGAATGTGgtaaaaaatttgtgagttCACAAAATTGGAAATTGCACAAAAGTACTCATGACCCGGAAAGAATGAAGTTCCCATGCCAATTTTGTAATAAGAAGTTTGCAGGAAAAAAGGGATTAAAACGTCATATGAAGATTCATACACGCGAAAACTTATTTCAATGTGCACAGTGTCAAAGAGAATTTACATGTAAAAGTGCTTTGAGAAGACATATGGAAATTCATTTAAGAGGAAATGTAAAgCTTTCTTGTGAATTATGTGATAAGAAATTAGTATCCAAATTCAGACTTGAAGAACATATGAAAATTCATGCATGTGAAAATTCGTTTAAATGTCCTGAATGTTATAGAGAATTTACACGAATAGGAAATTTgaacaaacatttaaaatctCATGCAACAAAAACGATACAGGTACAGAAAGGATCACagttttcttgtaaattgtGTGATAGTAAGTTAGCATCCAAAGGTGGACTTAGTCATCATATGAAAATTCATACACGTGAAAATgtgtttaaatgttctgaatgtgATAAAGAATTTATACAAGCAGGAAATTTGAACCGGCATTTAAAAACTCATGGAAAAGAAGGATTACAGaaacaaatatcacaaaattGTTCTGAAGTAAAAGGAAATCTCTTATCAGATGTCGATGGCAAATCAATGAATGGATGTACAACAGCCTTgtccaaaattataaaatctgAGAAAATTGGTTTAGTTAAAAAAGACTTAACCGAATATAATAATATCGCAAAAACTGAACTCAATATTGGAGAAAATACAGCATCTCATTTAGCTTATAACATCTGTTACAGTGAAACGATTTGTAAAGAAGAAGTAATTCTGTCTGATGAAAACGATTGa
Protein Sequence: MSKDCSSKQRGPQCYSCIEYGHLANICQKKNDKNPNVCASVRQDRDRYNKRIAIDGYEINGAVTTSFKGVGSGTMYTIGRITCNMVKDGETYRTIVNVADVAFMLLPYVIVGNELLAQTETVLRPDGISVRKLGSELPIYAIEKEDDLNLDHIQDRALTDKVQKMIIGYDSQKETVVVQNQIEEWMSEEIVRPSISNYASPVVLTNKKDGKKRLCVDYRRLNKIIVKDRYPPPIVDERIDQVQDAQLYCTLDLRNGFFHVPIPEDSIKYTTFVTPFGHHEFLRPSIAKIKKEIHEIEIEESTTPVYNAGENKLEYDEISIKRTSDKRHECNICNKQFPYTYRLNQHIQSHSNEKPYECSECGKKFVSSQNWKLHKSTHDPERMKFPCQFCNKKFAGKKGLKRHMKIHTRENLFQCAQCQREFTCKSALRRHMEIHLRGNVKLSCELCDKKLVSKFRLEEHMKIHACENSFKCPECYREFTRIGNLNKHLKSHATKTIQVQKGSQFSCKLCDSKLASKGGLSHHMKIHTRENVFKCSECDKEFIQAGNLNRHLKTHGKEGLQKQISQNCSEVKGNLLSDVDGKSMNGCTTALSKIIKSEKIGLVKKDLTEYNNIAKTELNIGENTASHLAYNICYSETICKEEVILSDEND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -