Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856188.1:107513383-107527680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.2e-05 0.015 18.1 1.8 1 23 25 49 25 49 0.98

2 11 0.00034 0.07 16.0 4.8 1 23 55 78 55 78 0.95

3 11 0.00018 0.037 16.9 1.8 1 23 87 109 87 109 0.97

4 11 0.0018 0.36 13.8 1.3 1 23 131 153 131 153 0.96

5 11 2e-06 0.00041 23.0 4.1 1 23 159 181 159 181 0.99

6 11 1.4e-05 0.0028 20.4 1.2 1 23 254 276 254 276 0.97

7 11 0.00078 0.16 14.9 6.9 1 23 282 304 282 304 0.97

8 11 0.68 1.4e+02 5.6 0.1 3 23 368 390 367 390 0.95

9 11 0.00016 0.032 17.1 3.3 1 20 396 415 396 419 0.91

10 11 0.0004 0.081 15.8 3.5 1 23 438 460 438 460 0.98

11 11 0.00015 0.03 17.2 2.6 1 23 466 489 466 489 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.2e-05	0.015	18.1	1.8	1	23	25	49	25	49	0.98
2	11	0.00034	0.07	16.0	4.8	1	23	55	78	55	78	0.95
3	11	0.00018	0.037	16.9	1.8	1	23	87	109	87	109	0.97
4	11	0.0018	0.36	13.8	1.3	1	23	131	153	131	153	0.96
5	11	2e-06	0.00041	23.0	4.1	1	23	159	181	159	181	0.99
6	11	1.4e-05	0.0028	20.4	1.2	1	23	254	276	254	276	0.97
7	11	0.00078	0.16	14.9	6.9	1	23	282	304	282	304	0.97
8	11	0.68	1.4e+02	5.6	0.1	3	23	368	390	367	390	0.95
9	11	0.00016	0.032	17.1	3.3	1	20	396	415	396	419	0.91
10	11	0.0004	0.081	15.8	3.5	1	23	438	460	438	460	0.98
11	11	0.00015	0.03	17.2	2.6	1	23	466	489	466	489	0.97

Sequence Information

Coding Sequence: ATGGAGCAACATGATCCACAAATACTATCcAAGGAATCAAAAACAGCATTGGCAATTTCTAAAAAGGGTTTGTTTGTCTGCCCTTGGGAAAATTGCGATAGAACCTTTAAACATAAAAATGGATATAAATATCATATACGAATtcacaaaaatgaaaaacctTACAAATGTTCATCATGTGATAAATATTTTCGATCGACTTCTCATTTAAAATCACATACGATGGAGCAACATGATCCACACAGAGTCAGACCATCcTATGAATGTCATCATTGCAATGCGTCATTCATAACAAAGTCGGGTATCAGAGTGCATCTCCAAGCTCATAACGGGGATAATTTTAATGTAGTAACAAAACCAAAACAGATTTATGCtgaatcagaaaaaaaatttagttgtaaGGATTGTGGCAAGAGATATTTGCAATTAGACACATTAAAAACTCATAGAGAACTACATTCACACGAAAACCCATATAAATGTTCACAGTGTGGTAAAGCATATGCACACAGAAGCAGTTTTACACGGCATCTTAAAACGCATggatataattttaaaACTCAtctaaaaagaaaagaaaaagatgATAAACAAGAAATCGTGACAGtgaaagaagaaaaaaatcatAGTGAAAACTCATGTGGTAGTTTTTCCTCAGTTCCCTTGAGCATAGATTATGAAAAAGAATCAATGATAAAACAAAACAAAACCAACTCAGAAACTTTGAAAACGCATTCTGAAGGCAGCGTGGAAACAAAGTATGTATGTTCATATTGTAATAAACGTTTTATGCGGCAAATGTCGTTGAAGTTGCATATGGGAATTCACAAAAATGCAAATCTACATAAATGCTCAGAATGCCATAGAAAGTTTAGTCGAAAGTTCGTTTTGCAAAAACATTTAGAGTCTCATGAAAAAACAAGATTAAACGAAAAAATAGATACAACTTCTGACAAAACATTAGATCATACTAATCCTGAATACAAAACTATAAAATTGGAGAAGTTTGATTTGAAAGAACCAGTTGGGTTCATTAAAGTCGAAAATGATGAGttaataaaattaactggTATGTTGAATATAAAGGAATTTGTTCGTGTTTGTCCTTGGGAAAACTGCAGTAAAATACTAAAATCATATAAAGGATATAGTTATCATATGCTAATTCATAGTGATGAAAAACCTTTCAAATGTTCTTCATGTGAAAAATGTTTTCGATCTAAAGGTGATTTAAAACGGCATTTTGTAGCGATTCATGATCCACTGAGCAGAGCCGTacctaaaaaatattattcagattcagaaaaaaaatttaagtgtgagaaatgtgataaaaaatttatgcaaGTCTCGTCTTTAACTTACCATAGTAAAAAACATGATGAAATAAAACTGTTTGAATGTTTAGAATGCAATAAAACATTTCAACACAAAGCAACTTTGGATAGACATTTGAAAATTAGACATTTAGACAGTGATCTTACATTTGAAGGTAATCTAAAGCGGCTAAATAACGATGAAGATCGAGAAATCAAGCAATCTTCAATTAACATTTTTGATAACCGATCTCCAAATGAAGAGTGtatccaaataaattttaaccACTGCGAGGCGGTACAGGACCTACTGACACAAACCGTTAGAGACCAGAAAGTGGACGTGTCATTGATTTGCGAACAATATAGAACCCCTGTTGTCGATGGGAACTGGGTTGAAATCAGGGCGAGCAAAGCCGCTATCTGGACCTGCAATACTCTTCCTTTTGAACACAGATCTAGTCGTCAGCATGAGGGTTTCGTCTATGCCAAAATCAAAGGTATCCACTTCTACAGCTGCTACATTCCTCCTAGTCCCTCACTGGACGAATTTGCAGAGACACTTGACCGACTAATGGCAGACGTTAGGGTTAAGCCACCCACCGTTATTGCGGGTGATTTTAACACTTGGACAGTTGAATGGGTTGTAATGATAGTTAAAGTATACGTACAAACCCTAGAGGTAGGGCATTTCTTGAGGCATTTGCCAGACTATCTGGTACTACTCAACCATGGTACTGCACAGACATCTAATAAAGGAGAAGCAGGTTCAACTATCGATATCACTTTTGAAAGTGGGACACTCGAGAAAGGAGCACAATGGAGGAGGTCTGACTTGTATACACATAGTTATCATCgtgctattatatttgaaacccaGTCACCACAGCGGTTTGAAAGGCGCCAAGCCAAGCGGAAGGAGCAGCAAGATGGGTGGAAAATCAAAGAGTTGGACACGGCGATGCTGGACTACATGGTTGAATGTATGCCAATACCGGAGAGATGA
Protein Sequence: MEQHDPQILSKESKTALAISKKGLFVCPWENCDRTFKHKNGYKYHIRIHKNEKPYKCSSCDKYFRSTSHLKSHTMEQHDPHRVRPSYECHHCNASFITKSGIRVHLQAHNGDNFNVVTKPKQIYAESEKKFSCKDCGKRYLQLDTLKTHRELHSHENPYKCSQCGKAYAHRSSFTRHLKTHGYNFKTHLKRKEKDDKQEIVTVKEEKNHSENSCGSFSSVPLSIDYEKESMIKQNKTNSETLKTHSEGSVETKYVCSYCNKRFMRQMSLKLHMGIHKNANLHKCSECHRKFSRKFVLQKHLESHEKTRLNEKIDTTSDKTLDHTNPEYKTIKLEKFDLKEPVGFIKVENDELIKLTGMLNIKEFVRVCPWENCSKILKSYKGYSYHMLIHSDEKPFKCSSCEKCFRSKGDLKRHFVAIHDPLSRAVPKKYYSDSEKKFKCEKCDKKFMQVSSLTYHSKKHDEIKLFECLECNKTFQHKATLDRHLKIRHLDSDLTFEGNLKRLNNDEDREIKQSSINIFDNRSPNEECIQINFNHCEAVQDLLTQTVRDQKVDVSLICEQYRTPVVDGNWVEIRASKAAIWTCNTLPFEHRSSRQHEGFVYAKIKGIHFYSCYIPPSPSLDEFAETLDRLMADVRVKPPTVIAGDFNTWTVEWVVMIVKVYVQTLEVGHFLRHLPDYLVLLNHGTAQTSNKGEAGSTIDITFESGTLEKGAQWRRSDLYTHSYHRAIIFETQSPQRFERRQAKRKEQQDGWKIKELDTAMLDYMVECMPIPER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -