Dgla079879.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- ZBTB47_1
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:106961751-106969255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00034 0.07 16.0 2.7 1 23 93 117 93 117 0.93 2 13 0.0023 0.47 13.4 1.6 1 23 123 146 123 146 0.95 3 13 0.011 2.2 11.3 0.8 1 21 153 173 153 177 0.90 4 13 0.00029 0.059 16.2 0.6 5 23 200 218 195 218 0.91 5 13 1.6e-05 0.0033 20.2 8.4 1 23 224 247 224 247 0.96 6 13 0.034 7 9.7 0.9 1 23 254 276 254 276 0.95 7 13 0.0009 0.18 14.7 1.7 1 23 295 317 295 317 0.98 8 13 0.019 4 10.5 2.8 1 23 323 345 323 345 0.98 9 13 0.011 2.2 11.3 2.6 3 23 489 511 487 511 0.92 10 13 0.00064 0.13 15.2 1.8 1 23 517 540 517 540 0.96 11 13 0.00087 0.18 14.8 2.1 1 23 580 603 580 603 0.87 12 13 1.7e-05 0.0036 20.1 2.3 2 23 619 640 618 640 0.96 13 13 0.00022 0.045 16.6 1.9 1 23 646 668 646 668 0.97
Sequence Information
- Coding Sequence
- atggAAGATGAATCAAGAATATCAACACTCCAAGGAGGTACATCTGAAAAGATCCAAAATAAAGACGAAAACAAATTTGATAAAACAAAACGTGTAACTAGAggcataaaattaaatataatcaatGATGATTGTAGTGATAATGGTACGGAGAGTGACAGTAATTCTTCTGAAAGCAATTTTAGTGAGATCGGTTCTAGTGATAGCTTTTCATCAGGTTCGTGTGATCCAGATTATGAAGAAGAAACAAATAATAGTgAATCAGGCCAAAGAAAGCATATCTGCTCTTGGAAGAAttgcaataaaatatttaaacagtCTAAAAGTTTGAAATATCACATGTTGGTTCACAATAATTTGAAACCTTTCAAATGTTCTTTGTGTGATCAAAGTTTTCGAACTAgagttattttaaataaacattcGATGAGAATGCATGATCCATTGAGACCAGATtttgATTGCAATCAGTGCACCGCCTCGTTTAAAACCGAAGCGGGACTGAGCAACCACCATAAAGCGAATATACACAATCATCTACTGAGAAAAATAATTGGCAAAAGTGGTAAAAAGCGCATACGAGCTTGTGTTTGGGAAAATTGCAATAGAACATTCACCGATCGGCAATCATTTCAATATCACATGCGAGtacataaaaatgaaaaaccttGTAAATGTCCACATTGCGATAAATGTTTTCGAGTAAATCGTTCATTAAAAAAGCATATCCGAAGGGTTCATGATCCACAGCGAGCTGttTATGAATGTTATCAGTGCAAATTACAATTCAAAACACAGTTAGGTTTCAGAAACCATGTCGCAGGGCATAATATGAACATTATAACAATGCCAAGGAAGTTATATTCagattcagaaaaaaaatttaactgtgAAGTTTGTAATAGAAAATTTCTTAGAATAGATTCCCTAAGAAACCATCAAAAAACACATACAGAGGAAAAATCATATGAATGTTCACAGTGCGATagtaaattttatgtacattacAGTTTAGTTCGACATTCTAAAATTCATGATCCAAGTAGAACATTGGGGCTACAAGAAATTGAATGCGAATCAATCACCCAACCATCCATTGGGTTTAACAATTCAactgataaaattgaaatgctaCAGCCCAAAAGAGAaaacgaaaaagaaaaaattgaagctATGAACGTAGACAAAAAACCAAAGAGTGAAAGATTTTATAGTTCTTTTGTGATAGGAAAGCCTGAAACTTGTATTAAAGAGAAAACATTAACCAAAGAAGAAGCTCACATTACAGAGCAgtacaaaagaaatattttcaataattattcTAGTGATTGTAACTCATCAACTTCTTCGAGTATAGATGATAACAGAATACCAAGTACAATACGGGATAAACTGGAAATAGATTACCATGAACAAATATCTATTGAAACGGTACATGCAGAACAAAGTCCGGAAGATTGTATATGTGACTGGAAAGGTTGCGGTAGACATTTCTCGGATTTGTCTAAAATGAGGTCTCATCGAGAAATTCATGTGAATGAAACAATTTTCCAATGTTCAATGTGTCCTCTAACATTTCAACATTCTGCTAATTTATTGAgtcattttaaaatttcacactaTTTGaaaaaacaagaaaatcaaaacatcCTAAGCAAACCAAAAATTAACCAGCCGAAGGATTCCTTACAAGAGTTTAGAAAATGGATATCTAACTTAGAAAATAAAGTAAATGAATACTCATGTAATGAATGCggcaaaacattttctaccAGTGAGCGACTAAACTTTCATAAACAACTATTTCATGATTCGGGcctcaaaaaaaattattctgaTTCAGAAAAACAGCTTTCGTGTGATGATTGTAATAAGAAATTTGTGCACCTAAgttcattaaaaattcatagaaAAGTACATACTGCCGAAAACATATATATGTGTTTACAATGTAATACAAAATTTGataccaaaaataatttgatcaGGCATTTTCAAATTCATGTAAGAAATGAATTGGATACGCAAGTGATTGAAACTCCATCTATGAACCAATACTCTACTGAAGAAACAAATACGAACGAGTTTGAGAAGCAGCCCGtcactaattttaaaataacaccAGCAAACATACAGAGCGATTCATtagatgaaataaaaattgagtTAGATGAAATAAAAGTAGAAAATATAGAATTAGTCAAAATTGAAGTAACTGAAGATACTAATATTGAAACAAATGAGGTAAGCATGACTATGAGTAGTATTGTACTACACGCTGAGAAACAAAGATTAAAGATTAAAATTGAAGAAACGTTATCGAGTGCTATGCCGTTTAACAACAACTATTTTAGCGAAACAATTTGTAAAGAAGAACTAATTATAAATGATTAA
- Protein Sequence
- MEDESRISTLQGGTSEKIQNKDENKFDKTKRVTRGIKLNIINDDCSDNGTESDSNSSESNFSEIGSSDSFSSGSCDPDYEEETNNSESGQRKHICSWKNCNKIFKQSKSLKYHMLVHNNLKPFKCSLCDQSFRTRVILNKHSMRMHDPLRPDFDCNQCTASFKTEAGLSNHHKANIHNHLLRKIIGKSGKKRIRACVWENCNRTFTDRQSFQYHMRVHKNEKPCKCPHCDKCFRVNRSLKKHIRRVHDPQRAVYECYQCKLQFKTQLGFRNHVAGHNMNIITMPRKLYSDSEKKFNCEVCNRKFLRIDSLRNHQKTHTEEKSYECSQCDSKFYVHYSLVRHSKIHDPSRTLGLQEIECESITQPSIGFNNSTDKIEMLQPKRENEKEKIEAMNVDKKPKSERFYSSFVIGKPETCIKEKTLTKEEAHITEQYKRNIFNNYSSDCNSSTSSSIDDNRIPSTIRDKLEIDYHEQISIETVHAEQSPEDCICDWKGCGRHFSDLSKMRSHREIHVNETIFQCSMCPLTFQHSANLLSHFKISHYLKKQENQNILSKPKINQPKDSLQEFRKWISNLENKVNEYSCNECGKTFSTSERLNFHKQLFHDSGLKKNYSDSEKQLSCDDCNKKFVHLSSLKIHRKVHTAENIYMCLQCNTKFDTKNNLIRHFQIHVRNELDTQVIETPSMNQYSTEETNTNEFEKQPVTNFKITPANIQSDSLDEIKIELDEIKVENIELVKIEVTEDTNIETNEVSMTMSSIVLHAEKQRLKIKIEETLSSAMPFNNNYFSETICKEELIIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -