Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856187.1:146968603-147000127[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00021 0.043 16.7 0.2 3 23 190 210 189 210 0.97

2 9 4.1e-06 0.00084 22.1 1.2 1 23 216 238 216 238 0.99

3 9 8.3e-07 0.00017 24.3 2.7 1 23 244 266 244 266 0.98

4 9 4.9e-05 0.01 18.7 1.4 1 23 276 298 276 298 0.99

5 9 2.3e-06 0.00047 22.9 2.0 1 23 304 326 304 326 0.98

6 9 0.0021 0.44 13.5 0.2 1 23 333 355 333 355 0.97

7 9 0.00078 0.16 14.9 0.3 1 20 367 386 367 389 0.93

8 9 6.2e-05 0.013 18.3 0.7 2 23 396 417 395 417 0.97

9 9 7.5e-06 0.0015 21.2 1.7 1 23 423 446 423 446 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00021	0.043	16.7	0.2	3	23	190	210	189	210	0.97
2	9	4.1e-06	0.00084	22.1	1.2	1	23	216	238	216	238	0.99
3	9	8.3e-07	0.00017	24.3	2.7	1	23	244	266	244	266	0.98
4	9	4.9e-05	0.01	18.7	1.4	1	23	276	298	276	298	0.99
5	9	2.3e-06	0.00047	22.9	2.0	1	23	304	326	304	326	0.98
6	9	0.0021	0.44	13.5	0.2	1	23	333	355	333	355	0.97
7	9	0.00078	0.16	14.9	0.3	1	20	367	386	367	389	0.93
8	9	6.2e-05	0.013	18.3	0.7	2	23	396	417	395	417	0.97
9	9	7.5e-06	0.0015	21.2	1.7	1	23	423	446	423	446	0.97

Sequence Information

Coding Sequence: ATGTCCGCACCCCCAACTGCTGATATGCTAACAATTATGTTTGAACAATCAATAAAAACCGAACCAATGGGATTTTATACAACATGTCACCCTCCACCGCCACCGTTATCACatttaatacaacaacaaaCACCGCATATTCAACAACACGCGTCCGCCCAGCAGCAATCTCCATCACATCAGCAAAATCAACAGCAGCACGCTCATCAACAATCTCATCAAGAACAACCTACATCATCACAAACCCCAACACCTTCATCACAACAACCGCAGATTTTAACACAACCTTTACCAACTAGAAGAGAACCATCTGGCCAAACCAACAATCATGCAATTTTAGATTGGCGAACAAGAATATCAGACAATGAGCAGGTTGCCGacgaagtaaaatattttCCTCAACAATCCCATACACCAATGTCGACTATCTCAGATGTAACGAAACAGGATTTAGCACATCAAACCAATACAAATTTACTAGGGATTCTTCCATTATCAACCGTATCACAAAACATAAATCATCATCCtcttaataataatagtaattcTAGAAGTAAGCCACAAGCCTGTAAAGTTTGTGGTAAAATGTTATCATCAGCTAGTAGTTATTATGTTCATATGAAATTACATTCGGGCACAAAACCGTTTCAATGCACGgTTTGCGAAGCTGCATTCTGCCGAAAACCATATTTAGAAGTTCATATGAGAACACACACCGGAGAGCGACCGTTTCAATGTGATGTATGTACAAAAAGATTTAGTCAAAAATCGTCATTAAATACACATAAAAGAATTCATACAGGTTATTGGAGCATGCATAAACCGTTTCAATGTTCACAATGTAATGCAGCATTTTGTCGGAAACCATATCTTGATATTCATATGCGCATACACACAGGGGAACGTCCATTTGAATGTGATATATGTTTTAAGCGATTTACACAGAAGTCGACATTAAATATACATAAACGCATACATTCTGCTCAAGAACGTCCTTTTCAATGTATTCAATGTCCTGCCGCATTTTACCGTAAACCGTATTTAGATATTCATATGAGAACACATACAGGAGATCGACCATTTGAATGTGAACGGCCGTATGCATGTGATATATGCAATAAAACGTTCGCTGTTAAAAGCTATGTGACGGCGCATAGATGGTCCCACGTATCAGAAAAACCACTAAGTTGTGATCGATGTTCAATGACTTTTACAAGTAAAGCTCAATTTGCAATTCATATCAGAACACATTCAGCTGGTCAGAACTATGAGTGTAATCTGTGTGGTCGGACGTTTATTCGTGATAGCTACCTCATTCGACATCATAATCGAGTTCATCGGGAAAATCGTACAACGGCTAATAGTATCGCAACAATAAATAGTGTAGCATTAGGTGAAGTAACTGGTAGTAATAATAATGTTAACAATAGTAGTATTAATACAAATCGAAATAGTAATGAGAGGACAAATGATGTTTTCGATAGTCAAAATAGTCATATGAGaTATACAAGTGATATGCATATTAACTCCCCACCAAATGGTTCACAACTACCGTCACCAGGTGGATTAGGTAATAATTCTGATAGGCATAATTTGAATCATAATAGACTGTCCGATCCACCAAATGTACAAAATTCGGTCGGAAGTAATAGTATTTCTAATCTACAAAATGGAAATCAAAACAATTCGACATTGAACTCTTCAAATAGTAATAACAATAGTCTTGgcaataatataaataatagttctagtaataataattgtttaCCGAACGACAACCGTAATTCTAACAACAATCAACAGCAtcagcaacaacaacaaataaatatgaTGAATTTAAATGATCGTTTAATGCAAGAACGAATTGTTTTACAAAATCGTGTTCTTTTAAATGACCGAGTAATGCAAGAGCGAGCGCTTCATGAAATGGCATTACAAGGTCGGGCAATACAAGAGAGAGCTTTACAGGAGCGTTCGTTAGGGCAACATGATCGCACAATACATACACCGTTAATAATACCTGGGCATTTATTAGCGGTACATGATCGTAGTACAGATAAAAATATCATTTCAAATCCAATAGCTAGTCCGAGACCTGTCTGA
Protein Sequence: MSAPPTADMLTIMFEQSIKTEPMGFYTTCHPPPPPLSHLIQQQTPHIQQHASAQQQSPSHQQNQQQHAHQQSHQEQPTSSQTPTPSSQQPQILTQPLPTRREPSGQTNNHAILDWRTRISDNEQVADEVKYFPQQSHTPMSTISDVTKQDLAHQTNTNLLGILPLSTVSQNINHHPLNNNSNSRSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDVCTKRFSQKSSLNTHKRIHTGYWSMHKPFQCSQCNAAFCRKPYLDIHMRIHTGERPFECDICFKRFTQKSTLNIHKRIHSAQERPFQCIQCPAAFYRKPYLDIHMRTHTGDRPFECERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKAQFAIHIRTHSAGQNYECNLCGRTFIRDSYLIRHHNRVHRENRTTANSIATINSVALGEVTGSNNNVNNSSINTNRNSNERTNDVFDSQNSHMRYTSDMHINSPPNGSQLPSPGGLGNNSDRHNLNHNRLSDPPNVQNSVGSNSISNLQNGNQNNSTLNSSNSNNNSLGNNINNSSSNNNCLPNDNRNSNNNQQHQQQQQINMMNLNDRLMQERIVLQNRVLLNDRVMQERALHEMALQGRAIQERALQERSLGQHDRTIHTPLIIPGHLLAVHDRSTDKNIISNPIASPRPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -