Dgla053026.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- topi_1
- Assembly
- GCA_963693315.1
- Location
- OY856187.1:167435964-167454041[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0059 1.2 12.1 0.6 3 23 297 317 296 317 0.98 2 11 0.11 23 8.1 4.2 1 23 401 424 401 424 0.94 3 11 0.31 63 6.7 0.0 2 21 433 452 432 453 0.93 4 11 1 2.1e+02 5.1 0.6 1 23 462 485 462 485 0.84 5 11 5.2e-06 0.0011 21.8 1.2 1 23 519 541 519 541 0.96 6 11 2.7e-06 0.00055 22.7 1.6 1 23 548 570 548 570 0.98 7 11 1.4e-07 2.8e-05 26.7 1.8 3 23 582 602 580 602 0.96 8 11 0.00011 0.022 17.6 2.8 1 23 608 630 608 630 0.99 9 11 5.4e-07 0.00011 24.8 2.9 3 23 638 658 636 658 0.97 10 11 4.4e-07 9e-05 25.1 2.7 1 23 664 686 664 686 0.99 11 11 0.021 4.2 10.4 0.1 1 22 692 713 692 716 0.91
Sequence Information
- Coding Sequence
- ATGGATATAGAGATTGGtgaaaacaatcaatttaatttagaaCTTATTGGATATTACAATTCTCAGCCATTAAATGATATCATAATGGCTTGCGTTCAAGTTCAAGTTGAAATAGATGATGGTATGCCAAATAATATATGTGATGAATATGTCACCGTCATAATAACTGATGCTAATGTTCGTATATTTAATCTACCTCCAGAAATTGAAGATAGGGATATTGGAGACGTGCTAAAAAAATATGGTACAATTAAATCATTAACCAGAGAAAAATATCCCATAAATTTGGGTTTAGATGTTTTTACTGGAGCAAGAGGAGCATTTATAGAAATGAAGCAAACAGTTCCTAATTTCATCTATACTCAGCGAGCAAGGGTTCACTATAATGGATTGAAAGAGTGTTGTTTTTTGTGCAAATCAGATTCACACAAAAACAATGAGTGTCCAAAGAACATTATAACAGCTCCTATAACTCTGTCTACTAATAATATTACATACTCTAGTGTTGCCAGCCAGTCTTTACAGACTCTCAGTACCAAAGCATTTGGTAGGTCATTAAATAAGCCTACAAATGAAACAGGAACCACTAATGTTAATGAAGCAGTAGCTCTGCCTTGTAGCTCTGGATCAGCTTTTCGTATTGCAGCGAACGCAAACCCAACATCTAATGAGTTGCCGACCAATGTACAGCCTATAGTTACAGCAACACCTGAAAATGATAGCTTACTTCAAACGGAAGATTTTTTGGGATTTCAATCACAAACAATTAGCttagtacaatttaaagtatcagagcctttaggtgggaaagcacaaaaaaaacaaagtgaCCAACCTAAATCTACCTTAATCCAGGAATTCACaagcaaaaatgaaataaaagcGTTATGTGGAATATGCGATCAGGAGTTTAAAAAGATTACACAAATTCGAAAACATCTTCAAACTCATTTAAATCCTATAACGCTAAAAGATATTGATCTGCAttcaaaattgtatttatacAATTTATCCGAAATTGAACCCGCTATAGAGACACACGAATCTTTAGTTACATATATAATCACTAATATTACAaataatagtttattaaatttttatcgaATCACAAATCATAGTGGCTTCGAATATAGTTTAACCGATTCTGAATCAGAGAGTGATTCTGAAAATCTAGTTCAAAGTGAAAAAAAAGAGAACGAGTATACGTGTTCTAAATGCGATGACCAATTTACTCGATTACATAAATTGAATGaacattttcaattaaaacatGCTAACGATAAAATTGATTATGTAACATGCGTTGTTTGTGATAGAAAATATCCTTCAGTTATATTATTATCAAAGCACGTTAAACGACAATGTTGCAATACTTTGAAGAAATATTCAtgtaatatatgtaaaattaaatttatgtggGAATATAGCCTTGAATTACATAACGAAAAATATCataaccaaaataataataaatcacTTGTTGAACCAGTAACAGAGAAAAAAACTAGAGGGAGTGTTGCTGGTACAAAGGCTgaaaaaccaaaagaaaaaaattatttatgtcaAATATGCAGCAAATCATTTTACAGACCAGAGCATTTAGAACGACACGTCAATATTCATATTCCATCTGAAAAGAAATTCGAATGTACGGTTTGTTTGAAGAAATTTAATCGAAAGGATAATTTAAGGTCACACATGAGTGTTCATAAAGATGATACCACTGATGTTGACAAACATCTTTGTGTTTATTGCGGAAGAAGTTTTACTAATTCATCTAATTTAATTGTGCACATGCGACGGCATACTGGTGAAAAACCATATAAATGTGATTTATGTGAAAAAGGTTTTCCTCGATCCTCTGATTTGCAATGTCATCGACGAACACATACCGGCGAAAAACCATGCTTATGTACAATATgtggaaaaagtttttcacGATCTAATAAGTTAGTACGACATATGCGTATACATACTGGTGTGCGACCATATCAGTGTACCCACTGTGATCGTGCGTTTACTCAATCTAATGATTTAACTCTACACATACGCCGTCATACCGGAGAGAAACCATATGTTTGTGGAATTTGTGGTGATCGTTTCATACAGGGAACAGCATTGCAAACTCATCGCCGAAATTTAGGGCATTTTGAGGAAACTCAACCGGCACCATTTGCTAGTATAAGTGTTAATAACCCAAATCGATTTACAAATGCAAATCGTGTTAACCGTATTGGAAACGCATCACCAGAGCATCCAACATCATCAGCCGTTActaatcaaataataaaaccaatcgTATCAAGACGCACACTTCCACtagaaaatattaaatctaACGAGTCATCAATATCACCATTACCGAATACTATAATTGCAAATGCAACGGATGTAATACCAACATTTATAAGTAACACCAGTGTAAGTTCACCAAATAATAATGCATCAACTTCACCGTCTGACCGTCATCAACTAACATCTGTATGCGCTCAGCGTCTCTTGCCTACAATAAATATACCAGGTACAGCATATACCCCAAATGGGATACCATTTATCTCGAATACAGGtgttttaatgcaaaatttagAAGTTTCAACTACATTATATTCTATTTCATCatataatgaaaatttcaacTAG
- Protein Sequence
- MDIEIGENNQFNLELIGYYNSQPLNDIIMACVQVQVEIDDGMPNNICDEYVTVIITDANVRIFNLPPEIEDRDIGDVLKKYGTIKSLTREKYPINLGLDVFTGARGAFIEMKQTVPNFIYTQRARVHYNGLKECCFLCKSDSHKNNECPKNIITAPITLSTNNITYSSVASQSLQTLSTKAFGRSLNKPTNETGTTNVNEAVALPCSSGSAFRIAANANPTSNELPTNVQPIVTATPENDSLLQTEDFLGFQSQTISLVQFKVSEPLGGKAQKKQSDQPKSTLIQEFTSKNEIKALCGICDQEFKKITQIRKHLQTHLNPITLKDIDLHSKLYLYNLSEIEPAIETHESLVTYIITNITNNSLLNFYRITNHSGFEYSLTDSESESDSENLVQSEKKENEYTCSKCDDQFTRLHKLNEHFQLKHANDKIDYVTCVVCDRKYPSVILLSKHVKRQCCNTLKKYSCNICKIKFMWEYSLELHNEKYHNQNNNKSLVEPVTEKKTRGSVAGTKAEKPKEKNYLCQICSKSFYRPEHLERHVNIHIPSEKKFECTVCLKKFNRKDNLRSHMSVHKDDTTDVDKHLCVYCGRSFTNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKSFSRSNKLVRHMRIHTGVRPYQCTHCDRAFTQSNDLTLHIRRHTGEKPYVCGICGDRFIQGTALQTHRRNLGHFEETQPAPFASISVNNPNRFTNANRVNRIGNASPEHPTSSAVTNQIIKPIVSRRTLPLENIKSNESSISPLPNTIIANATDVIPTFISNTSVSSPNNNASTSPSDRHQLTSVCAQRLLPTINIPGTAYTPNGIPFISNTGVLMQNLEVSTTLYSISSYNENFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -