Dgla075470.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- ZEB2_2
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:49444254-49446534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.002 0.41 13.6 0.3 3 23 147 168 146 168 0.95 2 17 0.00075 0.15 14.9 2.0 2 23 180 201 180 201 0.97 3 17 0.012 2.5 11.1 3.0 1 23 205 228 205 228 0.91 4 17 0.078 16 8.6 0.4 3 23 255 276 254 276 0.93 5 17 0.0016 0.33 13.9 1.6 1 23 287 310 287 310 0.95 6 17 0.015 3.1 10.9 2.9 1 23 314 337 314 337 0.97 7 17 0.24 48 7.1 6.0 2 23 364 386 364 386 0.94 8 17 0.00025 0.052 16.4 1.3 3 23 399 420 398 420 0.97 9 17 2 4.1e+02 4.1 0.6 3 23 426 447 425 447 0.92 10 17 0.021 4.2 10.4 0.1 2 23 490 512 490 512 0.96 11 17 0.00019 0.038 16.8 0.3 2 23 524 546 524 546 0.96 12 17 0.00071 0.14 15.0 0.1 1 23 550 572 550 572 0.98 13 17 0.0079 1.6 11.7 0.4 1 23 578 600 578 600 0.99 14 17 0.00016 0.032 17.1 5.4 1 23 606 628 606 628 0.99 15 17 0.37 76 6.5 0.7 1 23 634 656 634 656 0.93 16 17 7.6e-05 0.016 18.1 0.2 3 23 664 684 662 684 0.97 17 17 0.00088 0.18 14.7 5.1 1 23 690 713 690 713 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAAATTTGTCGAATGTGTTTATCTTCATACGAGGATatgatttcaattttctttacTGAAGGTGATAGCATAGCAATATCGGAAATGATATCTATTTGCACTGGAATAGAGAtttcaaaatatgataatttATCGGAACGGATATGCCAAAATTGTTTAACTGTCGTTACAAAGTTTTTCTTGTTTCGAGAACAGTGCTGGAAATCAAGCAAATACCTACTAAACGAACAACTTTTAAATATCAGAATAGAACAACGTTCTCCTTCGGCAAATCGATTTGATGATATGGATACATATAACATAAGTGATAATCCGCAAACAAACAGTTTAGGCTCAAAATCAGATGCAGATTCGACGACATCAGACGATACTGTTGCAAACAGTgaattaacaacaaaaaatcaaaactattcTTTGAAAAAGCGTAGAAGTTGTTATATATGTGACGAACAGTTTGTTAATATCTTTCAACTACGAAAACATTTAAGCTCAATACATAGCACACCGTTAGATGAAGAAAAGCTGGAAAATACTTGTCCAGtttgtgataaaaaatttaatacgtTTGTTTCCTTTAGCAAACATTTTTCTACTCACAATCCAAAGTTTAAATGCGATGTTtgtaatataaaatttcatacacaaAATGAACTAATTAGTCACAATTTACATGATCATGACAATAAAGACGAAGTTCTAAACTTGATGGACTACAACGATAGTGTATCATCTGATTCCCCAAAAAAGAATCGTAGTTGTTATTTATGTGACCAGATATTTGAGAATATtaactatttaaaaattcaccTCACCAATAAACATAGTACAGAACTTGATGAAAGCAAATTAGTTCATAAATGCAATGAatgttataaaatatttcaaagcTTTGGTGCTTTAAAGAAACACGTATCTATAGATCATTCTCATCAGTATACCTGCAAATACTGTTATATGAAATTAGATAACAGTAAACAATTCACGGATCATATACAATCAAAgcataaaaatttaatcagatCAAATGAAAATGATAGTTCTTTCTCTGAAATGGACaatgaaattgaattaattaaaaatcgtCGTTGTTATATGTGCgatcattgtttttttaatctaaaggacttaaaaatacattttctaaaaacgcatggagatgattttgatgaaaccaaattaaataatatatgcgaattttgttataaagatTTCGGCAGATTTCACAACTTGCAAGCTCATATTAGGACAATACATTCGCATAAGAATATCTGCACATATTGTGGAATCATGCAAAAAAGTACTGTGAAATTAGTTCAGCACATACATAATATTCACTTAGATGTAGATTTTGAAAAATCGATTGGTTACGATCGGCAAAACTATcaccaaacaaaaatatttatatcaaGCAAAGAAGGTGAACAAGTAAATTCAACTTCCAACGATAAATTAAAGCGTCGTAAATGTTATCTGTGTGATGAGCGGTTTGAAAGTGCTGATGCAGTAAGAGAACATGTAACTACAGtacataataaattatttgaacgTAAACGGATTGTAAATGAATGTGAAAtatgtaaaaaagtttttggaaCATACAAGTTATTAGTTAAACATATTATAAGATATCATCCTCGTTCATACATTTGTGATCAATGTGGAAAATCTTGGCCGAGCAAAAGAGGTCTGCTTGAACATATTCGAAGACATACAGGAGAAAAACCGTACAAATGCAATGAATGTGATTACAGAGCGGTAGATCCATTTAGTATTAAGGGGCATAAACGTACTCATACTGGAGAAATTCCTTTCGAATGCCACATATGTCATAAGAAATATAGATCTACAAGTGCTAGAGCGAGACATATTCGAACACATTCTGATGAACGACCTTATGTTTGTATTGTGTGCAGAAAAAGTTTTAAGCAGCTTAAAATCTACAAGGACCATTTACTAATACATGACTTGGAAAAGCATATTGCCTGTGAGTattgtggaaaaaaatttagtggTAAAAGAAACCTAGCACCTCATCTCAAAACACACACGGGAGAAAGAACTCATCACTGTGATCTTTGTGGCAAAGGTTTCATTCAAAGGCATTCCTGGAGAACCCATATGAAAAATGTTCACAGTGAAATTGTGGTTTAG
- Protein Sequence
- MSEICRMCLSSYEDMISIFFTEGDSIAISEMISICTGIEISKYDNLSERICQNCLTVVTKFFLFREQCWKSSKYLLNEQLLNIRIEQRSPSANRFDDMDTYNISDNPQTNSLGSKSDADSTTSDDTVANSELTTKNQNYSLKKRRSCYICDEQFVNIFQLRKHLSSIHSTPLDEEKLENTCPVCDKKFNTFVSFSKHFSTHNPKFKCDVCNIKFHTQNELISHNLHDHDNKDEVLNLMDYNDSVSSDSPKKNRSCYLCDQIFENINYLKIHLTNKHSTELDESKLVHKCNECYKIFQSFGALKKHVSIDHSHQYTCKYCYMKLDNSKQFTDHIQSKHKNLIRSNENDSSFSEMDNEIELIKNRRCYMCDHCFFNLKDLKIHFLKTHGDDFDETKLNNICEFCYKDFGRFHNLQAHIRTIHSHKNICTYCGIMQKSTVKLVQHIHNIHLDVDFEKSIGYDRQNYHQTKIFISSKEGEQVNSTSNDKLKRRKCYLCDERFESADAVREHVTTVHNKLFERKRIVNECEICKKVFGTYKLLVKHIIRYHPRSYICDQCGKSWPSKRGLLEHIRRHTGEKPYKCNECDYRAVDPFSIKGHKRTHTGEIPFECHICHKKYRSTSARARHIRTHSDERPYVCIVCRKSFKQLKIYKDHLLIHDLEKHIACEYCGKKFSGKRNLAPHLKTHTGERTHHCDLCGKGFIQRHSWRTHMKNVHSEIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -