Dgla074184.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:30389967-30413326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.022 17.6 1.6 1 23 92 114 92 114 0.98 2 13 3.2e-06 0.00065 22.4 3.9 1 23 120 142 120 142 0.99 3 13 1.6e-05 0.0033 20.2 2.6 1 23 149 171 149 171 0.98 4 13 0.66 1.4e+02 5.7 0.1 5 21 178 194 177 195 0.93 5 13 0.00037 0.075 15.9 2.2 1 23 309 331 309 331 0.96 6 13 8.2 1.7e+03 2.2 6.4 1 23 337 359 337 359 0.94 7 13 0.00013 0.027 17.3 2.6 1 23 377 399 377 399 0.98 8 13 1.5e-06 0.00031 23.4 1.7 1 23 406 428 406 428 0.98 9 13 0.0014 0.28 14.1 4.8 1 23 434 456 434 456 0.99 10 13 6.9e-05 0.014 18.2 0.5 1 23 463 485 463 485 0.98 11 13 3.5e-06 0.00071 22.3 0.4 2 23 492 513 491 513 0.97 12 13 0.0062 1.3 12.1 0.5 2 23 521 542 520 542 0.96 13 13 7.7e-05 0.016 18.1 0.5 1 23 548 570 548 570 0.98
Sequence Information
- Coding Sequence
- ATGTTTGTGTATCGAACCATAACTCGATACAACGAAACTGGTAGCATCGCTAAACGCAACAGAGGCGGTCCTAAAAAGACAGCAACATCAAAAGAAATGATTCGAAAGGTGAAGCAACGAATCCAACGAAATCCTCGTCAAAGTGCCAATCAATTAGCAGCACGTCTGTATGTTTCACGATACAGCATTCAAACCATATTGAAAAATGAACTACACTTGAAGTCCTACAAGATACAAAAAGTTCAAGATCTTACGGAGGCACAAAAAAAGTTAttttcttgtgATTTGTGTGATAGTAAGTTTAAATCCAAAACTGGACTAAAAAACCATATGAATCTTCATACACGTGAAAAGGTATTTAAATGTAATGTCTGTGGTGAAGACTTTACACATCAAAAAAGTTTGAAGAAGCATTTAAATAAGCATTTGAAAGAAAGAATACGGtttcattgtaaaatttgtGATAAGAAGTTGGTATCAAAAGATGGACTAAACAAACATATGAAAATGCATAGacgtaaaaatttgtttaaatgtgATAGTGAATTTACACGAATGGGAAATTTGAACGAGCATCTAAAAGCTGATGGAAAAGATAGATTGCAGAAAATATCACAAACAAGTTCTGAAGAAACAGGAGGTCTCCTATCAGATGTCGATATCAAATCGGAGAATGAATGTACATCAGCCTTATCCGAAATTATAAAGTCCGAGAAAATTGATTTAGTTGACACAGACTTAACCGAATATATTAATACCGCACAAACCGAAccattaataaataaaattaaaaaagaaataaatcaaaCCGAGAGTGAGGAAGCTACAACTCCTGTTTATAATAACGGACAGTATAAATTGGAGCATGATGAGATCAGAATTAAAAGAGAAATAGAACTGGAATCTGAAATTGTAACAGAAACGCATGATTGTAAGACGTGCAAGAAAAACTTTACGGATGAATTTGCCTTGGAAATGCATATGAAAGCTCATATGGATGAAAAGCCATATACatgttttaaatgtaaaaaaatattcaagtGTAGGAATAAGTGGGATTTACATCTTAAAAGACACAGAAAGGCTGGATTAAAGAAAGAGAAGTTTGATATATTGGATGACAAACCATATGAATGTTCAGAATGCAGTAAAAGATTTACACGAAAACAAACATGGCAAATGCACAAACTAACTCATGATCCGGAAAGATTGAAGTTTCCATGCCAAACTTGTAATAAGGAATTTAAAGGAAAAAGGGAATTGAAACGTCATATGAGGATCCATACACGCGAAAACTTGTTTCAATGTTCACACTGCAAAAAagaatttacatgtaaaaaTGCTTTGGTAGCTCATATGAAAATTCATACACGAGGAGAtttaaagttttcttgtaaaatatGTGATAAGAAGTTAGCATTCAAAGGTGGACTTAGAGAACATATGAAAATTCATACACGCGAAAAGTTGcttaaatgttctgaatgtgATAGAGAATTTACACAACTAGGAAATTTGAAACAGCATTTAGCAACTCATGTAAAAGAAAGATTACTGattcCTTGTAAATTATGTTATAAGAAGTTAACATCCGACGTTGGACTTAAACGACATATGAAACTCCATACacgtgaaaatttgtttaaatgttctgaatgtgATAGAGAATTTGCACTACTAGGAGATTTAAACCGGCATTTAAAATTTCACGGGAAAGAAATATTACAgGAAAAAATGGCAGAAATTTATGCTGTTCCAGATTCTGGTTTATATTGGACATGTGTGGTCTGTCGTGATTCACATACTGTATTAACAGATAAACTTAAAAGATTGGGCAAGTCATTTGCCGATATATTGGCTGCATTTGATAGTATTTCGAAGCTAATTACAGACTTTGAAATCTGTTTCGGTGCAATGCCTAAAATAAGAAATTCTGATACAAAATCAACTAAATCCAGCACTAGCGATGGCGGGGTTGCAGACAAACAATCAATGGCTACGACTATGGTGACAAACGCGATTCCAAATGAGGATTCTGTTGATATGATTAATTTAACTAAGGCAGATGTATCTTCTGTTCTACTTTTCCAGCCTTCATGTAATGATaatacttcaaatattttacgGAGAAATGATGTAAAGTTAACGAATAATGATGTATCTTCTAATATCAAATCATATACGCCTACCTTGAATATCATTGAACTTTCAGCTGTAATATTCTTATCAAGGTATTACAAACATGAAATGTTATATTGTATGaaaatatcaCAAATTGATTCTGAAGAAATAGGAGGTCTCTTATCAGATATCGCTGGCAAATCGATGAATGAATGTGCAACAGTCTTAtccaaaactataaaatctGAGAAAATTGGTTTGGTTGAAACAGACTTAACCGAATATAATAATATCGCACCAAATGAACTCAAAATTGAAGAAAACGAATCATCTCATTTGTATTATAACGCCTGTTACAGTGAAACGATTTGTAAAGAAGAAGTAATCCTGCCTGTTGAgaacaattaa
- Protein Sequence
- MFVYRTITRYNETGSIAKRNRGGPKKTATSKEMIRKVKQRIQRNPRQSANQLAARLYVSRYSIQTILKNELHLKSYKIQKVQDLTEAQKKLFSCDLCDSKFKSKTGLKNHMNLHTREKVFKCNVCGEDFTHQKSLKKHLNKHLKERIRFHCKICDKKLVSKDGLNKHMKMHRRKNLFKCDSEFTRMGNLNEHLKADGKDRLQKISQTSSEETGGLLSDVDIKSENECTSALSEIIKSEKIDLVDTDLTEYINTAQTEPLINKIKKEINQTESEEATTPVYNNGQYKLEHDEIRIKREIELESEIVTETHDCKTCKKNFTDEFALEMHMKAHMDEKPYTCFKCKKIFKCRNKWDLHLKRHRKAGLKKEKFDILDDKPYECSECSKRFTRKQTWQMHKLTHDPERLKFPCQTCNKEFKGKRELKRHMRIHTRENLFQCSHCKKEFTCKNALVAHMKIHTRGDLKFSCKICDKKLAFKGGLREHMKIHTREKLLKCSECDREFTQLGNLKQHLATHVKERLLIPCKLCYKKLTSDVGLKRHMKLHTRENLFKCSECDREFALLGDLNRHLKFHGKEILQEKMAEIYAVPDSGLYWTCVVCRDSHTVLTDKLKRLGKSFADILAAFDSISKLITDFEICFGAMPKIRNSDTKSTKSSTSDGGVADKQSMATTMVTNAIPNEDSVDMINLTKADVSSVLLFQPSCNDNTSNILRRNDVKLTNNDVSSNIKSYTPTLNIIELSAVIFLSRYYKHEMLYCMKISQIDSEEIGGLLSDIAGKSMNECATVLSKTIKSEKIGLVETDLTEYNNIAPNELKIEENESSHLYYNACYSETICKEEVILPVENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -