Dgla079385.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- ZEB1_1
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:102341387-102397208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.013 2.6 11.1 2.6 3 23 172 194 170 194 0.93 2 17 5.5e-05 0.011 18.5 2.6 1 23 200 222 200 222 0.97 3 17 0.00036 0.074 15.9 3.0 1 22 238 259 238 261 0.89 4 17 4.6e-05 0.0094 18.8 0.9 3 23 269 290 267 290 0.96 5 17 0.018 3.6 10.6 3.3 2 23 320 341 320 341 0.95 6 17 0.0051 1 12.3 1.8 1 22 347 368 347 368 0.94 7 17 0.0018 0.37 13.7 1.0 1 23 381 405 381 405 0.97 8 17 0.001 0.21 14.5 1.4 1 23 449 471 449 471 0.98 9 17 0.00014 0.029 17.2 7.2 1 23 517 539 517 539 0.98 10 17 0.036 7.3 9.7 0.6 1 23 545 567 545 567 0.96 11 17 1.2e-05 0.0024 20.6 6.1 1 23 598 620 598 620 0.98 12 17 0.00011 0.022 17.6 0.2 1 23 626 648 626 648 0.98 13 17 0.025 5.1 10.2 0.1 1 23 673 697 673 697 0.97 14 17 0.53 1.1e+02 6.0 4.2 1 23 742 764 742 764 0.91 15 17 0.0083 1.7 11.7 1.8 1 23 770 792 770 792 0.95 16 17 6e-06 0.0012 21.6 1.2 2 23 809 830 808 830 0.96 17 17 0.2 41 7.3 1.2 1 23 836 859 836 859 0.87
Sequence Information
- Coding Sequence
- ATGAAAGAAGAAACGCTTGAACATCATGAAATGGATTCAATTAATGTTTTGGAAGTAAAAACTGAAAAGCTAGAAAACATTTATAATGAAACGAAACTTGAAACAAACACAAATTATGTAATTAGATATATTCAACAAGAACAAACTGATTATCAGTGCAACACACTAAAGATGGCTAATGAATATACGGCAACAGCAATTAAAATCGAATGTAAGGACGAGGTTGAGACTAAAAGTGAAAACGAACAGTTTCGAAGTGTAATTGAACCAACGGGCAATACATTCAATGACAATTTGGTTCCGACTACATATGCCCAGTTTTTTCCAACTAATGTTATAGAACGAGATGTCATTAAAACGGAATTTAATACAAGCAAGGAAGAAGAAACAGATATAGCAAAAAGTGTAAGCATGGAAACACATATTTTACCTAATGGTAACTTAGATGATTTTTGTAGTATTGGTGGTCAACTAAAACAGgAATTTGATACGTCTGGAAAACGTCTGTTACACTGCACATGGGCAAACTGTAACAAAGTTTTTAGACATTTGAGAAGTATGGAATACCACATCAGAGCTCACAAAAACGAAAAACCTTTTAAATGTTCTACATGTGAACGATGTTTTCGAGGTAAAGGAAATTTAAGAAAACATGCTATCATCCATAATCTCAGTGATCCACAAACATTAATTCTTGAATCACAAAAAAGATATAAGTGTGAAGCTTGCGATAAAACatttacaaaacaatataatttaatacaGCATTGTGCAACTCAGCATACAGAGGTAAAACCGTTTGGATGTTTACAGTGCGATAAAAACTTTGCTACACAAGCATATTTGAGAAAACATATAAAACGTTATCATCCAATCTTGGCGATGGAGGAATTggaaaagaaaataacaaatcGTCAACTTGAAATTACAGATAATTATGAGTCAACGAAAAAAAATGTCTGTGAATATTGTGGTAAAAGATTTTTGAGGTTTTGTGATTTACAAAGGCACAGAACGTTGCATACTGGTGAACTACCATTTGAATGCTCAAAATGCAGGAGAAAATATAGAGGGAGAGACAGTCTTAACAGACATTCTAAGACTTGTGATGGGCAAGAAGTGgCACATCAAGTGAATTATTATGTATGTGACAAGGCAGGTTGTGGTAAAAGATTCTTCAACCATACTGATTTTATAGCCCATACAACCGTTCATATGAATGAATATAGATATCAATGTTCTTTGAATTCTAATAACACAAGAGAATATTCTTATCTTATGGGTCACATTGAAACCCACTCACTATTgATTTTCACGAATATTAATCCTGTGCCCGTTCGGAAATTCAAGTGTGAATTTTGTgataagaaatttttaacagCTTCTGATATAAAACGACATACAGCAACACATAAAGGGGAACATTTGTACAAAGAAGAATTTGACTTACATTATGCAATTCATGAATCAAATCATCAGGAAGAAGTGATTGCAAGTGTCTTTAATAGTAAAACtCCAAAAATGGAATTGTTTGATTTAAACCGAAAACATAAGTGTGAATATTGCAATAAGAGATTTATGCGATTGCAACAACTTAAAAGACATAGGAAAAAACACACAGGTGAAAATCCATATGAATGTGTATGGTGTTATCTCAAGTTTTCACGAAAAGAAGATTTTGATACACATTTTGCGATTCATGAACCAGCCCGTCAGGAAGGAATgactaaaataattttctttaccaaaaaagatCCACCAAAGAAAGAATTCTTTGATTTAAATCGAAAACATAAGTGTGAATATTGTACTAAAAGATTTACGCGATCTTATGatttaaaaactcataaaaGGATACATACAGGTGAAACTCCATATGAATGTTTATGGTGTAATCTAAAATTTTCACAACAAGAAAGTTTAGAGTCCCATGTTATGATTCATGACGAAAATTGTGCGACGGTACGGTGTTGTCGTAGTACTATGTACCATATGTGGATACATCAACTGGATTATTATGTGTGTGATTGGGATGGATGTGGTAgaaggtttttgaattattctgaTTTTATATCGCATACAATAGTTCACACCAAAGAATATAGATTTCAATGTTCTTTTGGTTCTAACAACATTGAAGACAATTCTAATTTGATGGGCCATATTGAAACGCCATTCTCATTGgaAAATCGATCATGTGTGCCTGCTACGAAAGTTCGAAAATTTGAGTGTGAATTTTGctataagaaatttttatcatttgcTCATTTAAAACGGCATAGACCAACACATAAAGGAGAAAATCCATTTCAATGTACACAGTGTCGCATAAAATTTCGGAGCAAAGAAGATTTAGACATACATTTTACAAATCATGAAACAACCCATTTGGAGCTGGATGCGAATAAAGATAAAAATAATCTTCAGTGCGAGATATGTAATAAAGTTTTTTCCCGTGCTTGGCATTTAAATCAGCATAAAGTAACCCACACAGGCGAAAAGCCATTTGATTGTCCAGAGTGCGATAAAAAGTATTCATGGGATGGTGGTTTGTATAGACATTTTGCAACATGTCATCCGGATAAAACACTGATGCGGAAAGAGAATGCAAgtaaatcaatcaatcaaacTTCTACAAGAATTAAAACTGAATCACAAATGTTTGTAAAAAAGTTGAGGGGAGTTGGATTTGGTCTAGAAAAGTTGAGAGGTAACGTAGGAGTGAATCATAAGTGTCTAAGATGCAATCTAGATGATCCTTTACATTTGTCCAGTTCAAATAAAAACTCATCAAAAGTTATAGGTGCATAG
- Protein Sequence
- MKEETLEHHEMDSINVLEVKTEKLENIYNETKLETNTNYVIRYIQQEQTDYQCNTLKMANEYTATAIKIECKDEVETKSENEQFRSVIEPTGNTFNDNLVPTTYAQFFPTNVIERDVIKTEFNTSKEEETDIAKSVSMETHILPNGNLDDFCSIGGQLKQEFDTSGKRLLHCTWANCNKVFRHLRSMEYHIRAHKNEKPFKCSTCERCFRGKGNLRKHAIIHNLSDPQTLILESQKRYKCEACDKTFTKQYNLIQHCATQHTEVKPFGCLQCDKNFATQAYLRKHIKRYHPILAMEELEKKITNRQLEITDNYESTKKNVCEYCGKRFLRFCDLQRHRTLHTGELPFECSKCRRKYRGRDSLNRHSKTCDGQEVAHQVNYYVCDKAGCGKRFFNHTDFIAHTTVHMNEYRYQCSLNSNNTREYSYLMGHIETHSLLIFTNINPVPVRKFKCEFCDKKFLTASDIKRHTATHKGEHLYKEEFDLHYAIHESNHQEEVIASVFNSKTPKMELFDLNRKHKCEYCNKRFMRLQQLKRHRKKHTGENPYECVWCYLKFSRKEDFDTHFAIHEPARQEGMTKIIFFTKKDPPKKEFFDLNRKHKCEYCTKRFTRSYDLKTHKRIHTGETPYECLWCNLKFSQQESLESHVMIHDENCATVRCCRSTMYHMWIHQLDYYVCDWDGCGRRFLNYSDFISHTIVHTKEYRFQCSFGSNNIEDNSNLMGHIETPFSLENRSCVPATKVRKFECEFCYKKFLSFAHLKRHRPTHKGENPFQCTQCRIKFRSKEDLDIHFTNHETTHLELDANKDKNNLQCEICNKVFSRAWHLNQHKVTHTGEKPFDCPECDKKYSWDGGLYRHFATCHPDKTLMRKENASKSINQTSTRIKTESQMFVKKLRGVGFGLEKLRGNVGVNHKCLRCNLDDPLHLSSSNKNSSKVIGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -