Dgla001070.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- CAVNZG010000183.1:135588-145528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00025 0.05 16.5 0.3 2 23 5 28 4 28 0.94 2 13 3.2e-05 0.0065 19.3 7.0 1 23 34 57 34 57 0.95 3 13 5.2e-05 0.011 18.6 1.8 1 23 78 102 78 102 0.98 4 13 0.00025 0.051 16.5 4.8 1 23 108 131 108 131 0.95 5 13 0.00013 0.027 17.3 1.8 1 23 140 162 140 162 0.97 6 13 0.0013 0.26 14.2 1.3 1 23 184 206 184 206 0.96 7 13 1.4e-06 0.0003 23.5 4.1 1 23 212 234 212 234 0.99 8 13 5.2e-06 0.0011 21.7 1.4 1 23 307 329 307 329 0.97 9 13 0.00056 0.11 15.3 6.9 1 23 335 357 335 357 0.97 10 13 0.49 1e+02 6.1 0.1 3 23 421 443 420 443 0.95 11 13 0.00011 0.023 17.5 3.3 1 20 449 468 449 472 0.91 12 13 0.00029 0.058 16.3 3.5 1 23 491 513 491 513 0.98 13 13 0.00011 0.022 17.6 2.6 1 23 519 542 519 542 0.97
Sequence Information
- Coding Sequence
- ATGACTTTTCTTGTCTGTTCTTGGGAGAATTGCGATAGAACCTTTACACGTCAAGATGTATATAGATATCATATAcgaattcataaaaatgaaaaaccttACAAATGTTCATCATGTGATAAATGTTTTCGATCGAATTCTCATTTAAAATCACATACGATGGAGCAACATGATCCACAAATACTATCcAAGGAATCAAAAACAGCATTGGCAATTTCTAAAAAGGGTTTGTTTGTCTGCCCTTGGGAAAATTGCGATAGAACCTTTAAACATAAAAATGGATATAAATATCATATACGAATtcacaaaaatgaaaaacctTACAAATGTTCATCATGTGATAAATATTTTCGATCGACTTCTCATTTAAAATCACATACGATGGAGCAACATGATCCACACAGAGTCAGACCATCcTATGAATGTCATCATTGCAATGCGTCATTCATAACAAAGTCGGGTATCAGAGTGCATCTCCAAGCTCATAACGGGGATAATTTTAATGTAGTAACAAAACCAAAACAGATTTATGCtgaatcagaaaaaaaatttagttgtaaGGATTGTGGCAAGAGATATTTGCAATTAGACACATTAAAAACTCATAGAGAACTACATTCACACGAAAACCCATATAAATGTTCACAGTGTGGTAAAGCATATGCACACAGAAGCAGTTTTACACGGCATCTTAAAACGCATggatataattttaaaACTCAtctaaaaagaaaagaaaaagatgATAAACAAGAAATCGTGACAGtgaaagaagaaaaaaatcatAGTGAAAACTCATGTGATAGTTTTTCCTCAGTTCCCTTGAGCATAGATTATGAAAAAGAATCAATGATAAAACAAAGCAAAACCAACTCAGAAACTTTGAAAACGCATTCTGAAGGCAGCGTGGAAACAAAGTATGTATGTTCATATTGTAATAAACGTTTTATGCGGCAAACGTCGTTGAAGTTGCATATGGGGATTCACAAAAATGCAACTCTACATAAATGTTCAGAATGCCATAGAAAGTTTAGTCGAAAGTTCGTTTTGCAAAAACATTTAGAGTCTCATGAAAAAACAAGATTAAAcGAAAAAATAGATACAACTTCTGACAAAACATTAAATCATACTAATCCTGAATACAAAACTATAAAATTGGAGAAGTTTGATTTGAAAGAACCAGTTGGGTTCATTAAAGTCGAAAATGATGAGttaatAAAATCAACTGGTATGTTGAATATAAAGGAATTTGTTCGTGTTTGTCCTTGGGAAAACTGCAGTAAAATACTAAAATCATATAAAGGATATAGTTATCATATGCTAATTCATAGTGATGAAAAACCTTTCAAATGTTCTTCATGTGAAAAATGTTTTCGATCTAAAGGTGATTTAAAACGGCATTTTGTAGCGATTCATGATCCACTGAGCAGAGCCGTacctaaaaaatattattcagattcagaaaaaaaatttaagtgtgagaaatgtgataaaaaatttatgcaaGTCTCGTCTTTAACTTACCATAGTAAAAAACATGATGAAATAAAACTGTTTGAATGTTTAGAATGCAATAAAACATTTCAACACAAAGCAACTTTGGATAGACATTTGAAAATTAGACATTTAGACAGTGATCTTACATTTGAAGGTAATCTAAAGCAGCTAAATAACGATGAAGATCGAGAAATCAAGCAATCTTCAATTAACATTTTTGATAACCGATCTCCAAATGAAGAGATTTGCATTGAAACTTAG
- Protein Sequence
- MTFLVCSWENCDRTFTRQDVYRYHIRIHKNEKPYKCSSCDKCFRSNSHLKSHTMEQHDPQILSKESKTALAISKKGLFVCPWENCDRTFKHKNGYKYHIRIHKNEKPYKCSSCDKYFRSTSHLKSHTMEQHDPHRVRPSYECHHCNASFITKSGIRVHLQAHNGDNFNVVTKPKQIYAESEKKFSCKDCGKRYLQLDTLKTHRELHSHENPYKCSQCGKAYAHRSSFTRHLKTHGYNFKTHLKRKEKDDKQEIVTVKEEKNHSENSCDSFSSVPLSIDYEKESMIKQSKTNSETLKTHSEGSVETKYVCSYCNKRFMRQTSLKLHMGIHKNATLHKCSECHRKFSRKFVLQKHLESHEKTRLNEKIDTTSDKTLNHTNPEYKTIKLEKFDLKEPVGFIKVENDELIKSTGMLNIKEFVRVCPWENCSKILKSYKGYSYHMLIHSDEKPFKCSSCEKCFRSKGDLKRHFVAIHDPLSRAVPKKYYSDSEKKFKCEKCDKKFMQVSSLTYHSKKHDEIKLFECLECNKTFQHKATLDRHLKIRHLDSDLTFEGNLKQLNNDEDREIKQSSINIFDNRSPNEEICIET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -